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Os07g0550400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.42 (0.0345) R2 : 0.762
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.69 (0.099) R2dC : 1.06 R2C : 0.408
β3 : -2.93 (0.154) R2dE : 0.329 R2E : -0.294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.076) R2dN8 : 0.00341 R2N8 : 0.0198
σ : 0.631
deviance : 183.54
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C
peak time of C : 22.6
E
wheather : radiation
threshold : 59.76
memory length : 47520
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 7.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.16 0.644 8.71 2.14 3.06 -3.39 2.58 -11.5 0.67 22.2 54.08 4320 18 6.55
232.5 0.71 8.29 1.62 2.76 -2.63 0.547 -- 0.702 22.5 180.9 47520 18.2 5.85
206.35 0.669 8.71 2.03 2.8 -3.1 -- -10.6 0.8 22.3 29.72 4320 18 6.99
221.76 0.694 8.32 1.22 2.96 -2.42 -- -- 0.787 22.3 107.8 47520 18.5 7.5
413 0.947 8.7 2.69 -- -5.04 -- -11 0.771 -- 23.2 4315 18 9.31
332.12 0.854 8.3 0.262 2.54 -- 0.881 -- 0.685 22.7 -- -- -- --
335.34 0.858 8.31 0.226 2.53 -- -- -- 0.683 22.7 -- -- -- --
515.27 1.06 8.32 -0.0783 -- -2.13 -- -- 0.037 -- 1.796 47279 18.2 5.67
183.54 0.631 8.42 -- 3.69 -2.93 -- -- 0.19 22.6 59.76 47520 18.8 7.78
731.93 1.26 8.24 0.276 -- -- -- -- 0.697 -- -- -- -- --
336.69 0.858 8.31 -- 2.54 -- -- -- 0.658 22.7 -- -- -- --
410.32 0.943 8.35 -- -- -2.81 -- -- 0.239 -- 2.199 47409 18.6 7.77
733.94 1.26 8.25 -- -- -- -- -- 0.666 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.21 radiation 1.0 43200 > th dose independent rect. 18 11
2 186.94 radiation 1.0 43200 > th dose independent rect. 18 1
12 189.06 radiation 40.0 4320 < th dose dependent rect. 18 7
13 189.81 radiation 1.0 43200 < th dose independent rect. 18 11
14 190.03 radiation 1.0 43200 < th dose independent rect. 18 7
18 190.15 radiation 1.0 43200 < th dose independent rect. 18 5
41 194.08 radiation 40.0 14400 < th dose dependent rect. 18 5
57 195.23 radiation 1.0 14400 > th dose independent rect. 18 13
94 197.42 radiation 1.0 14400 > th dose independent rect. 18 16
99 197.67 radiation 1.0 14400 < th dose independent rect. 18 13
102 198.08 radiation 1.0 14400 > th dose independent rect. 5 2
104 198.17 radiation 1.0 14400 < th dose independent rect. 5 2
120 198.38 radiation 1.0 14400 < th dose independent rect. 24 7
128 198.44 radiation 1.0 14400 < th dose independent rect. 2 5
136 198.72 radiation 20.0 4320 < th dose dependent rect. 17 13
137 198.80 humidity 90.0 43200 > th dose independent rect. 22 1
148 199.32 radiation 1.0 14400 < th dose independent rect. 18 16
149 199.35 humidity 90.0 43200 > th dose dependent rect. 5 5
159 199.44 radiation 1.0 4320 > th dose dependent rect. 17 13
177 199.52 humidity 90.0 43200 > th dose dependent rect. 4 9
185 199.60 radiation 1.0 14400 > th dose independent sin 9 NA
192 199.63 radiation 1.0 43200 < th dose dependent rect. 4 1
193 199.64 humidity 90.0 43200 > th dose dependent rect. 5 3
224 199.87 radiation 1.0 4320 > th dose dependent rect. 17 1
237 200.04 radiation 1.0 14400 < th dose independent sin 8 NA
255 200.13 humidity 90.0 43200 > th dose dependent rect. 4 13
413 200.92 humidity 90.0 43200 > th dose dependent rect. 4 19
415 200.93 radiation 1.0 43200 < th dose dependent rect. 21 8
485 201.40 temperature 20.0 43200 < th dose dependent rect. 4 1
543 201.75 humidity 90.0 43200 > th dose dependent sin 1 NA
549 201.79 temperature 20.0 43200 > th dose independent rect. 12 12
552 201.81 humidity 90.0 43200 > th dose independent rect. 5 19
564 201.88 temperature 20.0 43200 > th dose independent rect. 9 17
586 201.96 temperature 20.0 43200 < th dose independent rect. 9 17
605 202.04 temperature 20.0 43200 > th dose independent rect. 19 2
607 202.04 temperature 20.0 43200 < th dose independent rect. 11 15
613 202.08 temperature 20.0 43200 > th dose independent sin 18 NA
614 202.08 temperature 20.0 43200 < th dose independent rect. 12 13
638 202.15 temperature 20.0 43200 < th dose independent rect. 20 1
683 202.29 temperature 20.0 43200 < th dose independent sin 18 NA
743 202.44 humidity 90.0 43200 < th dose independent rect. 22 1
754 202.47 humidity 90.0 43200 > th dose independent rect. 5 6
876 202.84 precipitation 0.1 43200 < th dose independent rect. 2 8
878 202.84 precipitation 0.1 43200 < th dose dependent rect. 2 8
881 202.85 humidity 90.0 43200 > th dose independent rect. 4 9
939 203.03 humidity 90.0 43200 < th dose independent rect. 18 1
981 203.10 humidity 90.0 43200 > th dose dependent rect. 22 1
984 203.11 temperature 20.0 43200 < th dose independent rect. 1 23
998 203.15 precipitation 0.1 43200 > th dose independent rect. 2 8
1000 203.15 temperature 20.0 43200 < th dose independent rect. 19 23