Os07g0549600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os07g0549600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 299.04 | 0.812 | 5.7 | -2.91 | 1.49 | -0.963 | -1.6 | -0.346 | -1.51 | 1.64 | 70.03 | 1323 | -- | -- |
| 299.31 | 0.806 | 5.7 | -2.94 | 1.5 | -0.972 | -1.55 | -- | -1.52 | 1.62 | 70.34 | 1326 | -- | -- |
| 308.63 | 0.818 | 5.69 | -2.89 | 1.49 | -0.941 | -- | -0.0682 | -1.5 | 1.81 | 70 | 1318 | -- | -- |
| 308.57 | 0.818 | 5.7 | -2.89 | 1.46 | -0.959 | -- | -- | -1.51 | 1.84 | 70 | 1274 | -- | -- |
| 409.02 | 0.942 | 5.7 | -3.02 | -- | -1.61 | -- | 0.528 | -1.57 | -- | 70.32 | 1132 | -- | -- |
| 335.77 | 0.859 | 5.67 | -2.74 | 1.63 | -- | -1.32 | -- | -1.38 | 1.71 | -- | -- | -- | -- |
| 342.5 | 0.867 | 5.67 | -2.7 | 1.64 | -- | -- | -- | -1.38 | 1.84 | -- | -- | -- | -- |
| 409.98 | 0.943 | 5.69 | -2.97 | -- | -1.56 | -- | -- | -1.54 | -- | 70.85 | 1134 | -- | -- |
| 494.27 | 1.04 | 5.62 | -- | 1.56 | -1.46 | -- | -- | -1.27 | 2.02 | 87 | 2373 | -- | -- |
| 505.01 | 1.05 | 5.65 | -2.63 | -- | -- | -- | -- | -1.34 | -- | -- | -- | -- | -- |
| 534.01 | 1.08 | 5.6 | -- | 1.59 | -- | -- | -- | -1.08 | 1.8 | -- | -- | -- | -- |
| 581.26 | 1.12 | 5.63 | -- | -- | -2.03 | -- | -- | -1.29 | -- | 87 | 1057 | -- | -- |
| 687.23 | 1.22 | 5.58 | -- | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.53 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 5 | 285.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 6 | 285.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 11 | 285.78 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 13 | 285.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 21 | 286.44 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 23 | 286.47 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 29 | 286.89 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 33 | 287.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 51 | 288.02 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 63 | 288.29 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 81 | 288.65 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 84 | 288.69 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 92 | 289.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 121 | 289.76 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 136 | 289.99 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 212 | 291.59 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 215 | 291.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 216 | 291.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 221 | 291.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 240 | 292.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 257 | 292.30 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 302 | 292.81 | wind | 7.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 331 | 293.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 344 | 293.18 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 400 | 293.60 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 429 | 293.87 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 467 | 294.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 470 | 294.30 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 502 | 294.56 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 523 | 294.74 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 580 | 295.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 600 | 295.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 601 | 295.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 608 | 295.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 628 | 295.49 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 649 | 295.69 | wind | 1.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 666 | 295.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 676 | 295.93 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 703 | 296.12 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 708 | 296.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 734 | 296.30 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 743 | 296.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 772 | 296.56 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 788 | 296.67 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 811 | 296.87 | wind | 1.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 826 | 297.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 890 | 297.46 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 896 | 297.52 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 898 | 297.53 | wind | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 922 | 297.72 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 930 | 297.77 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 975 | 298.10 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 984 | 298.13 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 990 | 298.18 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 2 |