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Os07g0549200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.04 (0.0277) R2 : 0.806
β1 : 1.51 (0.102) R2dD : 0.0976 R2D : 0.111
β2 : 2.54 (0.0701) R2dC : 0.569 R2C : 0.483
β3 : -2.2 (0.109) R2dE : 0.182 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.244 (0.0596) R2dN8 : 0.00995 R2N8 : 0.00273
σ : 0.516
deviance : 122.91
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C
peak time of C : 15.7
E
wheather : temperature
threshold : 32.46
memory length : 127
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.31
open length of G : 15.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.53 0.516 9.02 1.64 2.53 -2.12 0.585 -1.57 0.284 16 30.98 89 3.87 15.4
123.05 0.517 9.03 1.55 2.51 -2.16 0.175 -- 0.25 15.8 32.15 124 3.3 15.6
120.47 0.511 9.02 1.61 2.55 -2.11 -- -1.3 0.301 16 31.49 93 3.73 15.5
122.91 0.516 9.04 1.51 2.54 -2.2 -- -- 0.244 15.7 32.46 127 3.31 15.6
341.32 0.865 9.05 1.59 -- -3.14 -- -2.68 0.0497 -- 29.85 72 3.1 11.5
180.73 0.63 9.02 1.82 2.64 -- 1.11 -- 0.426 17.1 -- -- -- --
183.84 0.635 9.02 1.82 2.65 -- -- -- 0.431 17 -- -- -- --
313.39 0.825 9.16 1.2 -- -3.48 -- -- -0.0567 -- 30.19 67 1.33 11.7
182.25 0.629 9.06 -- 2.49 -2.28 -- -- 0.184 15.8 31.41 128 3.37 15.6
551.86 1.1 8.99 1.73 -- -- -- -- 0.364 -- -- -- -- --
271.38 0.771 9.06 -- 2.62 -- -- -- 0.228 17.1 -- -- -- --
314.91 0.826 9.05 -- -- -3.41 -- -- 0.15 -- 30.17 156 0.0167 10.3
630.53 1.17 9.03 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.49 temperature 30 90 < th dose dependent rect. 4 15
2 123.74 temperature 30 90 < th dose dependent rect. 4 17
3 124.47 temperature 30 90 < th dose dependent rect. 3 20
9 125.85 temperature 30 10 < th dose dependent rect. 4 18
24 127.53 temperature 10 270 > th dose dependent rect. 6 20
35 128.20 temperature 15 10 > th dose dependent rect. 9 19
66 130.95 temperature 10 90 > th dose dependent sin 3 NA
69 131.08 temperature 30 90 < th dose dependent sin 2 NA
94 132.27 temperature 15 270 > th dose dependent rect. 22 14
186 135.05 temperature 25 270 < th dose independent rect. 2 17
191 135.15 temperature 25 90 < th dose independent rect. 4 18
209 135.74 temperature 30 10 < th dose dependent rect. 4 8
243 136.38 temperature 15 270 > th dose dependent rect. 6 8
391 139.75 temperature 15 270 > th dose dependent rect. 17 22
479 141.08 temperature 25 270 < th dose independent rect. 2 9
501 141.36 temperature 20 10 > th dose dependent rect. 7 9
532 141.76 temperature 20 10 > th dose dependent rect. 9 7
608 142.76 temperature 25 270 > th dose independent rect. 22 15
668 143.33 temperature 20 10 > th dose dependent rect. 9 13
675 143.42 temperature 25 270 < th dose independent sin 5 NA
695 143.62 temperature 25 270 > th dose independent sin 5 NA
757 144.22 temperature 20 10 > th dose dependent rect. 7 11
816 144.68 temperature 25 270 > th dose independent rect. 6 7