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Os07g0546700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L38.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0208) R2 : 0.583
β1 : 1.5 (0.0762) R2dD : 0.366 R2D : 0.288
β2 : 0.838 (0.0541) R2dC : 0.221 R2C : 0.188
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.377 (0.0444) R2dN8 : 0.0884 R2N8 : 0.00179
σ : 0.391
deviance : 69.76
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.22 0.371 13.9 1.53 0.87 -0.625 0.662 -0.958 0.35 19.7 39.5 72 -- --
63.77 0.372 13.9 1.54 0.852 -0.562 0.461 -- 0.359 19.6 39.5 70 -- --
63.36 0.371 13.9 1.52 0.867 -0.6 -- -0.737 0.354 19.6 39.5 70 -- --
64.36 0.374 13.9 1.52 0.869 -0.544 -- -- 0.355 19.5 39.5 70 -- --
84.78 0.429 13.9 1.53 -- -0.725 -- -0.582 0.282 -- 40.7 799 -- --
69.24 0.39 13.9 1.5 0.836 -- 0.453 -- 0.376 18.8 -- -- -- --
69.76 0.391 13.9 1.5 0.838 -- -- -- 0.377 18.8 -- -- -- --
83.17 0.425 13.9 1.41 -- -0.692 -- -- 0.226 -- 40.7 813 -- --
124.13 0.519 13.9 -- 0.873 -0.289 -- -- 0.203 19.1 30.31 93 -- --
106.53 0.482 13.9 1.48 -- -- -- -- 0.361 -- -- -- -- --
128.79 0.531 13.9 -- 0.821 -- -- -- 0.21 18.9 -- -- -- --
134.1 0.539 14 -- -- -0.796 -- -- 0.0536 -- 40 800 -- --
164.15 0.598 13.9 -- -- -- -- -- 0.197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.30 temperature 10.0 30 > th dose dependent rect. 9 19
11 56.75 temperature 10.0 30 > th dose dependent rect. 9 5
16 56.92 humidity 90.0 10 < th dose independent rect. 2 7
27 57.39 atmosphere 1005.0 10 > th dose dependent rect. 3 6
33 57.53 temperature 10.0 270 > th dose dependent rect. 9 1
70 58.40 atmosphere 1005.0 270 > th dose dependent rect. 4 1
75 58.52 atmosphere 1005.0 270 > th dose dependent rect. 3 3
82 58.60 wind 5.0 30 < th dose independent rect. 4 5
87 58.66 radiation 1.0 10 > th dose independent rect. 9 5
91 58.69 temperature 10.0 1440 > th dose independent rect. 5 5
94 58.69 atmosphere 995.0 1440 > th dose independent rect. 5 5
95 58.69 atmosphere 1015.0 1440 < th dose independent rect. 5 5
96 58.69 radiation 40.0 10 < th dose independent rect. 5 15
97 58.69 temperature 10.0 1440 > th dose independent rect. 10 19
100 58.70 wind 1.0 30 > th dose independent rect. 9 5
104 58.74 humidity 50.0 30 > th dose independent rect. 9 5
105 58.76 temperature 10.0 1440 > th dose independent rect. 10 5
108 58.76 temperature 10.0 1440 > th dose independent rect. 15 19
111 58.77 wind 5.0 270 < th dose independent rect. 3 4
112 58.77 precipitation 0.1 30 < th dose independent rect. 9 5
114 58.77 precipitation 0.1 30 < th dose dependent rect. 9 5
115 58.78 temperature 10.0 30 > th dose independent rect. 9 5
117 58.78 atmosphere 995.0 30 > th dose independent rect. 9 5
118 58.78 atmosphere 1015.0 30 < th dose independent rect. 9 5
119 58.78 temperature 10.0 30 > th dose independent rect. 14 19
120 58.79 temperature 10.0 30 > th dose dependent rect. 4 5
141 58.93 wind 9.0 30 < th dose independent rect. 14 19
149 58.99 precipitation 0.1 30 < th dose independent rect. 14 19
151 58.99 precipitation 0.1 30 < th dose dependent rect. 14 19
154 59.01 wind 5.0 270 < th dose independent rect. 4 1
155 59.01 wind 9.0 30 < th dose independent rect. 9 5
182 59.09 precipitation 0.1 30 < th dose independent rect. 4 5
184 59.09 precipitation 0.1 30 < th dose dependent rect. 4 5
191 59.12 temperature 10.0 30 > th dose independent rect. 4 5
193 59.12 temperature 30.0 30 < th dose independent rect. 4 5
194 59.12 humidity 50.0 30 > th dose independent rect. 4 5
196 59.12 atmosphere 995.0 30 > th dose independent rect. 4 5
197 59.12 atmosphere 1015.0 30 < th dose independent rect. 4 5
199 59.12 temperature 10.0 30 > th dose independent rect. 9 19
203 59.13 atmosphere 995.0 30 > th dose independent rect. 14 19
204 59.13 radiation 40.0 30 < th dose independent rect. 14 19
205 59.13 precipitation 0.1 30 < th dose independent rect. 9 19
206 59.13 precipitation 0.1 30 < th dose dependent rect. 9 19
221 59.19 radiation 10.0 270 < th dose independent rect. 17 10
225 59.22 wind 1.0 30 > th dose independent rect. 4 5
234 59.24 humidity 90.0 30 < th dose independent rect. 9 5
236 59.25 precipitation 0.1 270 < th dose independent rect. 3 14
237 59.25 precipitation 0.1 270 < th dose dependent rect. 3 14
241 59.27 radiation 40.0 90 < th dose independent rect. 4 15
252 59.31 wind 9.0 30 < th dose independent rect. 9 19
256 59.32 radiation 30.0 90 < th dose independent rect. 3 6
263 59.37 precipitation 0.1 270 < th dose independent rect. 3 4
266 59.37 precipitation 0.1 270 < th dose dependent rect. 3 4
267 59.38 atmosphere 995.0 30 > th dose independent rect. 9 19
268 59.38 temperature 10.0 10 > th dose dependent rect. 9 14
270 59.39 wind 9.0 270 < th dose independent rect. 17 10
289 59.42 humidity 50.0 30 > th dose independent rect. 14 19
290 59.43 temperature 10.0 270 > th dose independent rect. 17 10
294 59.43 temperature 10.0 270 > th dose independent rect. 3 14
295 59.43 atmosphere 1015.0 270 < th dose independent rect. 3 14
296 59.43 radiation 1.0 30 > th dose independent rect. 18 15
299 59.44 radiation 40.0 270 < th dose dependent rect. 17 10
313 59.49 wind 1.0 270 > th dose independent rect. 3 4
325 59.54 humidity 50.0 270 > th dose independent rect. 9 1
344 59.58 temperature 15.0 90 > th dose dependent rect. 20 18
348 59.59 radiation 40.0 10 < th dose independent rect. 12 21
349 59.60 radiation 1.0 30 > th dose independent rect. 5 4
372 59.64 precipitation 0.1 270 < th dose independent rect. 9 1
374 59.64 temperature 10.0 270 > th dose independent rect. 3 4
376 59.64 temperature 30.0 270 < th dose independent rect. 3 4
377 59.64 humidity 50.0 270 > th dose independent rect. 3 4
379 59.64 atmosphere 995.0 270 > th dose independent rect. 3 4
380 59.64 atmosphere 1015.0 270 < th dose independent rect. 3 4
383 59.64 humidity 50.0 270 > th dose independent rect. 17 10
386 59.64 temperature 10.0 270 > th dose independent rect. 7 20
387 59.64 precipitation 0.1 270 < th dose dependent rect. 9 1
397 59.66 wind 9.0 270 < th dose independent rect. 9 1
398 59.66 temperature 10.0 270 > th dose independent rect. 9 1
399 59.66 atmosphere 995.0 270 > th dose independent rect. 9 1
400 59.66 atmosphere 1015.0 270 < th dose independent rect. 9 1
403 59.66 precipitation 0.1 270 < th dose independent rect. 17 10
404 59.66 temperature 10.0 270 > th dose independent rect. 10 23
406 59.66 precipitation 0.1 270 < th dose dependent rect. 17 10
411 59.68 wind 9.0 270 < th dose independent rect. 7 20
413 59.68 radiation 40.0 270 < th dose dependent rect. 3 4
418 59.70 atmosphere 995.0 270 > th dose independent rect. 17 10
420 59.70 humidity 50.0 30 > th dose independent rect. 9 19
424 59.72 precipitation 0.1 270 < th dose independent rect. 7 20
429 59.72 precipitation 0.1 270 < th dose dependent rect. 7 20
430 59.73 precipitation 0.1 270 < th dose independent rect. 4 1
438 59.73 wind 9.0 270 < th dose independent rect. 3 14
440 59.73 precipitation 0.1 270 < th dose dependent rect. 4 1
453 59.77 wind 1.0 30 > th dose independent rect. 14 19
458 59.78 atmosphere 1015.0 30 < th dose independent rect. 9 19
460 59.78 temperature 10.0 270 > th dose dependent rect. 20 16
472 59.81 radiation 1.0 270 < th dose dependent rect. 4 1
473 59.81 temperature 10.0 270 > th dose dependent rect. 18 9
474 59.81 radiation 1.0 30 > th dose dependent rect. 18 15
476 59.82 radiation 1.0 270 > th dose independent rect. 9 1
493 59.85 radiation 1.0 30 > th dose dependent rect. 5 4
522 59.87 wind 9.0 270 < th dose dependent rect. 3 4
523 59.87 wind 9.0 30 < th dose dependent rect. 4 5
529 59.89 wind 1.0 270 > th dose independent rect. 9 1
531 59.89 atmosphere 1005.0 30 > th dose independent rect. 4 5
541 59.92 temperature 10.0 270 > th dose independent rect. 4 1
543 59.92 temperature 30.0 270 < th dose independent rect. 4 1
544 59.92 humidity 50.0 270 > th dose independent rect. 4 1
547 59.92 atmosphere 995.0 270 > th dose independent rect. 4 1
548 59.92 atmosphere 1010.0 270 < th dose independent rect. 4 1
550 59.92 radiation 20.0 270 < th dose independent rect. 4 1
556 59.92 temperature 10.0 270 > th dose independent rect. 5 23
569 59.94 atmosphere 1005.0 270 > th dose independent rect. 3 4
573 59.94 radiation 40.0 270 < th dose dependent rect. 4 1
589 59.95 radiation 1.0 10 > th dose dependent rect. 16 17
608 59.98 wind 1.0 270 > th dose independent rect. 1 7
662 60.03 radiation 1.0 270 < th dose independent rect. 4 1
670 60.04 radiation 1.0 270 > th dose dependent rect. 9 1
743 60.13 humidity 50.0 4320 > th dose independent rect. 5 5
781 60.19 atmosphere 1015.0 30 < th dose independent rect. 14 19
783 60.19 wind 9.0 270 < th dose dependent rect. 4 1
792 60.21 atmosphere 995.0 270 > th dose independent rect. 7 20
797 60.22 temperature 25.0 30 > th dose independent rect. 1 8
866 60.29 temperature 30.0 270 < th dose independent rect. 18 9
868 60.29 humidity 50.0 270 > th dose independent rect. 7 20