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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0546500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0227) R2 : 0.00287
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0547 (0.0477) R2dN8 : 0.0037 R2N8 : 0.00287
σ : 0.427
deviance : 83.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.06 0.415 3.26 0.107 0.235 -0.235 -0.29 -0.864 0.0456 7.59 69.51 4455 -- --
78.98 0.414 3.26 0.0653 0.232 -0.311 -0.307 -- 0.0214 7.47 70.03 4383 -- --
78.14 0.412 3.26 0.117 0.244 -0.163 -- -0.999 0.0659 7.7 70 4956 -- --
79.2 0.414 3.26 0.0541 0.23 -0.304 -- -- 0.0176 7.83 70.09 4332 -- --
81.22 0.42 3.27 0.118 -- -0.195 -- -0.96 0.0476 -- 70 5817 -- --
80.42 0.42 3.25 0.0656 0.235 -- -0.293 -- 0.0575 7.59 -- -- -- --
80.66 0.421 3.25 0.0589 0.234 -- -- -- 0.0582 7.78 -- -- -- --
82.08 0.422 3.27 0.0582 -- -0.315 -- -- 0.0183 -- 71 4348 -- --
79.26 0.415 3.26 -- 0.234 -0.297 -- -- 0.0101 7.94 70.86 4250 -- --
83.62 0.427 3.26 0.0618 -- -- -- -- 0.0615 -- -- -- -- --
80.75 0.42 3.26 -- 0.235 -- -- -- 0.0516 7.76 -- -- -- --
82.17 0.422 3.27 -- -- -0.314 -- -- 0.0135 -- 71 4346 -- --
83.72 0.427 3.26 -- -- -- -- -- 0.0547 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.33 radiation 10.0 10 > th dose independent rect. 6 1
27 73.33 radiation 10.0 10 > th dose dependent rect. 6 1
53 75.03 atmosphere 1000.0 30 > th dose independent rect. 3 23
55 75.19 wind 1.0 30 < th dose independent rect. 10 1
56 75.19 temperature 10.0 1440 > th dose independent rect. 11 1
60 75.19 atmosphere 995.0 1440 > th dose independent rect. 11 1
63 75.19 precipitation 0.1 1440 < th dose independent rect. 11 1
64 75.19 temperature 10.0 1440 > th dose independent rect. 12 23
67 75.19 wind 1.0 30 < th dose dependent rect. 10 1
68 75.19 precipitation 0.1 1440 < th dose dependent rect. 11 1
70 75.27 atmosphere 1005.0 90 > th dose dependent rect. 2 1
86 75.44 atmosphere 1005.0 10 > th dose dependent rect. 2 2
87 75.47 radiation 1.0 43200 < th dose dependent rect. 3 1
90 75.63 temperature 25.0 30 > th dose dependent rect. 10 1
92 75.67 humidity 70.0 30 < th dose independent rect. 10 1
93 75.85 atmosphere 1010.0 30 < th dose independent rect. 10 1
96 75.96 temperature 25.0 90 > th dose independent rect. 1 1
97 75.96 radiation 40.0 30 < th dose independent rect. 10 1
98 76.02 radiation 20.0 30 > th dose independent rect. 10 1
99 76.02 humidity 70.0 30 < th dose dependent rect. 10 1
102 76.06 radiation 1.0 4320 < th dose dependent rect. 3 1
103 76.06 temperature 25.0 90 > th dose dependent rect. 1 2
104 76.08 temperature 25.0 30 > th dose independent rect. 10 1
108 76.11 atmosphere 1005.0 30 > th dose independent rect. 10 1
115 76.14 wind 9.0 1440 < th dose independent rect. 3 1
117 76.14 temperature 10.0 1440 > th dose independent rect. 3 1
120 76.14 temperature 30.0 1440 < th dose independent rect. 3 1
124 76.14 humidity 50.0 1440 > th dose independent rect. 3 1
133 76.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
134 76.14 radiation 1.0 1440 < th dose independent rect. 3 1
154 76.14 temperature 10.0 1440 > th dose independent rect. 4 23
169 76.15 wind 3.0 30 < th dose dependent rect. 6 1
175 76.21 atmosphere 1000.0 30 > th dose dependent rect. 10 1
176 76.24 wind 3.0 30 < th dose independent rect. 2 1
180 76.24 atmosphere 995.0 720 > th dose independent rect. 7 8
181 76.24 wind 5.0 30 < th dose dependent rect. 2 1
184 76.24 temperature 10.0 30 > th dose dependent rect. 2 1
188 76.24 atmosphere 1010.0 30 < th dose dependent rect. 2 1
190 76.25 atmosphere 1005.0 30 > th dose independent rect. 2 1
197 76.26 temperature 10.0 30 > th dose independent rect. 2 1
199 76.26 temperature 30.0 30 < th dose independent rect. 2 1
200 76.26 humidity 50.0 30 > th dose independent rect. 2 1
203 76.26 humidity 90.0 30 > th dose independent rect. 2 1
204 76.26 atmosphere 995.0 30 > th dose independent rect. 2 1
206 76.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
208 76.26 radiation 1.0 30 < th dose independent rect. 2 1
213 76.26 precipitation 0.1 30 < th dose independent rect. 2 1
214 76.26 temperature 10.0 30 > th dose independent rect. 3 23
215 76.26 humidity 50.0 30 > th dose dependent rect. 2 1
218 76.26 radiation 1.0 30 < th dose dependent rect. 2 1
223 76.26 precipitation 0.1 30 < th dose dependent rect. 2 1
232 76.32 wind 1.0 30 > th dose independent rect. 2 1
233 76.32 temperature 30.0 30 < th dose dependent rect. 2 1
237 76.34 atmosphere 1005.0 30 > th dose dependent rect. 6 1
248 76.37 wind 5.0 30 < th dose dependent rect. 10 1
251 76.38 temperature 30.0 30 < th dose independent rect. 10 1
256 76.41 precipitation 0.1 30 < th dose independent rect. 3 23
262 76.41 precipitation 0.1 30 < th dose dependent rect. 3 23
271 76.42 humidity 60.0 30 > th dose independent rect. 10 1
295 76.47 temperature 10.0 30 > th dose independent rect. 10 1
299 76.47 humidity 90.0 30 < th dose independent rect. 10 1
303 76.47 precipitation 0.1 30 < th dose independent rect. 10 1
304 76.47 temperature 10.0 30 > th dose independent rect. 11 23
305 76.47 precipitation 0.1 30 < th dose dependent rect. 10 1
308 76.51 wind 1.0 30 > th dose independent rect. 10 1
313 76.55 atmosphere 1005.0 10 > th dose dependent rect. 2 6
319 76.59 radiation 40.0 30 < th dose dependent rect. 10 1
322 76.68 humidity 90.0 90 < th dose independent rect. 1 6
323 76.68 wind 9.0 720 < th dose independent rect. 19 8
324 76.68 radiation 1.0 30 > th dose dependent rect. 10 1
325 76.70 wind 9.0 30 < th dose independent rect. 3 23
329 76.74 precipitation 0.1 720 < th dose independent rect. 19 8
330 76.74 precipitation 0.1 720 < th dose dependent rect. 19 8
334 76.82 precipitation 0.1 720 < th dose independent rect. 15 16
335 76.82 precipitation 0.1 720 < th dose dependent rect. 15 16
336 76.83 humidity 80.0 30 > th dose dependent rect. 6 1
343 76.89 temperature 10.0 720 > th dose independent rect. 7 8
344 76.89 atmosphere 1015.0 720 < th dose independent rect. 7 8
345 76.89 temperature 10.0 720 > th dose independent rect. 15 16
351 76.92 temperature 10.0 720 > th dose independent rect. 19 8
352 76.92 temperature 30.0 720 < th dose independent rect. 19 8
353 76.92 humidity 50.0 720 > th dose independent rect. 19 8
354 76.92 atmosphere 995.0 720 > th dose independent rect. 19 8
355 76.92 radiation 1.0 720 < th dose independent rect. 19 8
360 76.92 temperature 10.0 720 > th dose independent rect. 3 16
361 76.92 radiation 1.0 720 < th dose dependent rect. 19 8
367 76.95 humidity 80.0 14400 < th dose dependent rect. 4 5
373 76.99 humidity 50.0 30 > th dose independent rect. 3 23
377 77.01 humidity 80.0 14400 < th dose dependent rect. 7 2
381 77.05 humidity 50.0 30 > th dose dependent rect. 10 1
382 77.06 humidity 90.0 90 < th dose independent rect. 2 1
385 77.07 atmosphere 995.0 720 > th dose independent rect. 3 16
389 77.13 atmosphere 1015.0 30 < th dose dependent rect. 10 1
392 77.19 wind 1.0 30 > th dose dependent rect. 10 1
394 77.21 wind 3.0 30 < th dose dependent rect. 2 11
397 77.24 temperature 25.0 90 < th dose independent rect. 6 1
398 77.24 humidity 70.0 4320 > th dose independent rect. 10 1
400 77.25 humidity 70.0 14400 > th dose independent rect. 8 1
404 77.28 precipitation 0.1 720 < th dose independent rect. 7 8
405 77.28 wind 1.0 14400 < th dose dependent rect. 6 1
406 77.28 precipitation 0.1 720 < th dose dependent rect. 7 8
425 77.31 temperature 30.0 30 < th dose dependent rect. 6 1
432 77.32 humidity 70.0 4320 < th dose independent rect. 10 1
434 77.32 wind 9.0 30 < th dose independent rect. 11 23
436 77.34 humidity 80.0 4320 > th dose independent rect. 7 3
438 77.35 humidity 80.0 4320 < th dose independent rect. 7 4
439 77.35 atmosphere 995.0 720 > th dose independent rect. 15 16
443 77.39 humidity 70.0 14400 > th dose independent rect. 4 5
453 77.41 humidity 70.0 14400 < th dose independent rect. 8 1
460 77.43 wind 1.0 10 < th dose independent rect. 6 1
466 77.43 humidity 80.0 14400 < th dose dependent rect. 24 10
468 77.44 humidity 50.0 4320 > th dose dependent rect. 11 1
475 77.46 wind 9.0 720 < th dose independent rect. 15 16
502 77.50 humidity 80.0 4320 < th dose dependent rect. 11 1
595 77.58 humidity 50.0 4320 > th dose dependent rect. 3 10
596 77.58 radiation 10.0 30 < th dose dependent rect. 3 23
625 77.60 humidity 90.0 4320 < th dose dependent rect. 3 10
630 77.61 wind 3.0 30 < th dose dependent rect. 2 6
662 77.63 humidity 70.0 4320 > th dose independent sin 6 NA
690 77.64 humidity 90.0 4320 < th dose dependent rect. 6 7
698 77.65 temperature 20.0 10 > th dose independent rect. 6 1
700 77.65 humidity 80.0 10 < th dose independent rect. 6 2
705 77.65 humidity 70.0 4320 > th dose dependent rect. 7 1
737 77.68 radiation 10.0 30 < th dose independent rect. 3 23
739 77.68 humidity 50.0 4320 > th dose dependent rect. 7 1
779 77.70 humidity 70.0 4320 < th dose independent sin 6 NA
823 77.71 humidity 90.0 4320 < th dose dependent rect. 23 15
891 77.74 humidity 90.0 4320 < th dose dependent sin 4 NA
995 77.78 humidity 50.0 4320 > th dose dependent sin 4 NA
998 77.78 humidity 60.0 4320 < th dose dependent rect. 14 1