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Os07g0546400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NPH3 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.94 (0.0296) R2 : 0.563
β1 : -2.28 (0.112) R2dD : 0.441 R2D : 0.242
β2 : 0.679 (0.0763) R2dC : 0.0795 R2C : 0.0313
β3 : 1.48 (0.0906) R2dE : 0.278 R2E : 0.04
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.282 (0.0636) R2dN8 : 0.0261 R2N8 : -0.0265
σ : 0.552
deviance : 140.49
__
_____
C
peak time of C : 16
E
wheather : temperature
threshold : 25.37
memory length : 1224
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.58 0.545 9.02 -2.99 0.662 1.83 -1.3 -3.15 -0.462 15 25.32 1171 -- --
137.35 0.546 8.93 -2.24 0.619 1.66 -1.23 -- -0.298 14.5 24.85 1050 -- --
138.7 0.549 9.02 -2.91 0.677 1.7 -- -2.54 -0.437 16 25.47 1240 -- --
140.49 0.552 8.94 -2.28 0.679 1.48 -- -- -0.282 16 25.37 1224 -- --
155.13 0.58 9.01 -2.91 -- 1.8 -- -2.68 -0.458 -- 25.29 1845 -- --
216.4 0.69 8.9 -1.79 0.45 -- -1.32 -- -0.138 15.7 -- -- -- --
218.68 0.693 8.91 -1.82 0.516 -- -- -- -0.144 17.4 -- -- -- --
157.26 0.584 8.94 -2.3 -- 1.54 -- -- -0.32 -- 25.02 1865 -- --
268.93 0.764 8.89 -- 0.638 1.16 -- -- -0.0788 15.1 25.42 1055 -- --
232.54 0.713 8.9 -1.83 -- -- -- -- -0.157 -- -- -- -- --
305.51 0.818 8.86 -- 0.547 -- -- -- 0.0577 17.3 -- -- -- --
284.6 0.786 8.84 -- -- 1.05 -- -- 0.0956 -- 27.3 944 -- --
321.13 0.836 8.86 -- -- -- -- -- 0.0461 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.57 radiation 20 14400 > th dose dependent rect. 16 15
2 137.79 radiation 1 720 > th dose independent rect. 17 13
3 139.32 radiation 30 14400 > th dose independent rect. 16 16
4 139.34 wind 5 43200 > th dose independent rect. 10 2
5 139.37 wind 5 43200 < th dose independent rect. 10 2
6 139.51 radiation 30 14400 < th dose independent rect. 15 17
7 139.85 temperature 25 1440 > th dose dependent rect. 11 7
9 139.92 temperature 25 1440 > th dose dependent rect. 11 12
15 140.05 temperature 25 1440 > th dose dependent sin 21 NA
26 140.17 radiation 20 14400 > th dose dependent rect. 16 1
49 140.31 temperature 25 1440 > th dose dependent rect. 7 12
58 140.35 radiation 1 1440 < th dose dependent rect. 9 21
85 140.48 wind 5 43200 > th dose dependent rect. 10 3
90 140.48 temperature 25 1440 > th dose dependent rect. 11 22
94 140.51 temperature 25 1440 > th dose dependent rect. 16 1
104 140.55 radiation 1 1440 > th dose independent rect. 13 17
105 140.55 temperature 25 1440 > th dose dependent rect. 13 5
117 140.60 wind 5 43200 > th dose dependent rect. 12 1
137 140.66 radiation 30 14400 > th dose dependent rect. 15 17
149 140.71 radiation 1 1440 > th dose independent rect. 11 19
151 140.71 temperature 25 1440 > th dose dependent rect. 21 22
172 140.78 humidity 90 43200 > th dose dependent rect. 17 6
182 140.80 radiation 30 14400 < th dose independent rect. 15 2
212 140.87 temperature 25 1440 > th dose dependent rect. 13 23
215 140.89 radiation 30 14400 < th dose independent rect. 15 8
229 140.92 temperature 25 1440 > th dose dependent no NA NA
270 141.10 atmosphere 1005 43200 > th dose independent rect. 18 1
274 141.15 humidity 90 43200 > th dose dependent rect. 20 1
278 141.17 wind 7 43200 < th dose independent rect. 3 11
292 141.27 atmosphere 1005 43200 > th dose independent rect. 16 1
293 141.28 atmosphere 1005 43200 > th dose independent rect. 16 3
296 141.29 atmosphere 1005 43200 < th dose independent rect. 17 1
301 141.30 temperature 25 720 > th dose dependent rect. 17 16
326 141.43 radiation 30 14400 > th dose independent rect. 7 1
345 141.46 humidity 90 43200 > th dose independent rect. 18 1
359 141.53 wind 7 43200 > th dose independent rect. 3 11
362 141.55 wind 7 43200 < th dose independent rect. 24 14
369 141.61 radiation 1 1440 < th dose independent rect. 10 20
373 141.64 radiation 1 1440 < th dose independent rect. 13 17
388 141.75 humidity 90 43200 < th dose independent rect. 17 2
397 141.81 humidity 90 43200 > th dose dependent rect. 9 15
409 141.93 wind 7 43200 > th dose independent rect. 24 14
445 142.16 radiation 10 1440 < th dose dependent rect. 17 13
461 142.30 humidity 90 43200 > th dose dependent rect. 9 2
473 142.35 radiation 1 14400 > th dose dependent rect. 17 12
475 142.37 wind 7 43200 < th dose independent rect. 8 6
516 142.51 radiation 1 14400 > th dose dependent rect. 17 2
527 142.52 temperature 25 4320 < th dose independent rect. 8 2
529 142.54 humidity 70 14400 > th dose independent rect. 19 2
533 142.57 humidity 70 14400 > th dose independent rect. 19 4
551 142.63 temperature 10 1440 > th dose dependent rect. 16 1
553 142.64 radiation 1 1440 < th dose dependent sin 13 NA
565 142.68 humidity 90 43200 > th dose dependent sin 19 NA
567 142.69 radiation 1 1440 > th dose independent sin 13 NA
578 142.75 humidity 70 14400 > th dose independent rect. 19 8
617 143.03 wind 5 43200 > th dose dependent rect. 3 11
618 143.04 temperature 25 4320 > th dose independent rect. 8 2
619 143.04 humidity 90 43200 > th dose independent rect. 15 8
629 143.10 temperature 25 43200 > th dose independent rect. 17 1
632 143.11 humidity 90 43200 > th dose independent rect. 9 2
640 143.16 humidity 90 43200 < th dose independent rect. 10 1
642 143.16 humidity 90 43200 > th dose independent rect. 9 14
652 143.20 radiation 1 1440 > th dose dependent rect. 17 13
653 143.22 temperature 25 43200 < th dose independent rect. 17 1
657 143.24 radiation 20 14400 < th dose dependent rect. 17 12
665 143.29 wind 5 43200 < th dose independent rect. 5 1
666 143.29 temperature 20 43200 > th dose independent rect. 20 1
684 143.34 radiation 10 14400 < th dose dependent rect. 18 1
703 143.39 radiation 1 1440 < th dose dependent rect. 18 1
708 143.40 radiation 20 14400 < th dose dependent rect. 17 6
713 143.42 temperature 25 14400 > th dose independent rect. 16 14
720 143.46 atmosphere 1010 43200 < th dose independent rect. 7 1
730 143.48 wind 5 43200 > th dose dependent rect. 24 15
750 143.53 radiation 20 14400 < th dose dependent rect. 17 10
771 143.58 radiation 1 1440 < th dose independent sin 13 NA
797 143.64 temperature 20 43200 < th dose independent rect. 20 1
798 143.64 temperature 25 14400 < th dose independent rect. 16 14
804 143.66 temperature 10 14400 > th dose dependent rect. 1 1
809 143.67 humidity 90 43200 < th dose independent rect. 9 4
814 143.68 humidity 90 43200 < th dose independent rect. 9 14
825 143.71 temperature 30 14400 < th dose dependent rect. 1 2
859 143.81 wind 5 43200 > th dose independent rect. 5 1
860 143.81 humidity 90 43200 > th dose independent rect. 22 1
868 143.82 temperature 30 14400 < th dose dependent rect. 22 1
875 143.85 temperature 25 14400 > th dose independent sin 13 NA
878 143.85 radiation 1 1440 < th dose dependent rect. 18 5
882 143.86 temperature 10 14400 > th dose dependent rect. 22 1
931 143.94 humidity 90 43200 < th dose independent rect. 12 11
939 143.95 humidity 50 720 > th dose dependent rect. 17 6
944 143.96 temperature 10 14400 > th dose dependent rect. 21 8
945 143.96 temperature 30 14400 < th dose dependent rect. 21 8
956 143.98 humidity 90 43200 > th dose independent sin 19 NA
969 144.00 humidity 80 43200 > th dose independent rect. 11 2
993 144.03 humidity 90 43200 < th dose independent sin 18 NA