Os07g0545500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VMP4 protein.
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Os07g0545500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VMP4 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.91 | 0.322 | 5.55 | 0.564 | 0.864 | 0.767 | -0.348 | 1.52 | 0.124 | 6.16 | 20.56 | 1607 | -- | -- |
| 48.73 | 0.325 | 5.6 | 0.171 | 0.914 | 0.823 | -0.392 | -- | 0.0289 | 6 | 22.86 | 1666 | -- | -- |
| 47.09 | 0.32 | 5.54 | 0.572 | 0.911 | 0.792 | -- | 1.6 | 0.127 | 6.26 | 20.57 | 1779 | -- | -- |
| 48.64 | 0.325 | 5.6 | 0.139 | 0.964 | 0.848 | -- | -- | 0.0229 | 6.56 | 22.65 | 2115 | -- | -- |
| 81.86 | 0.421 | 5.53 | 0.715 | -- | 0.697 | -- | 1.95 | 0.209 | -- | 20.9 | 2840 | -- | -- |
| 71.91 | 0.398 | 5.56 | 0.426 | 0.858 | -- | -0.349 | -- | 0.198 | 6.07 | -- | -- | -- | -- |
| 72.18 | 0.398 | 5.56 | 0.423 | 0.857 | -- | -- | -- | 0.199 | 6.16 | -- | -- | -- | -- |
| 84.12 | 0.427 | 5.6 | 0.0905 | -- | 0.856 | -- | -- | 0.0723 | -- | 23.5 | 5671 | -- | -- |
| 48.85 | 0.326 | 5.6 | -- | 0.943 | 0.925 | -- | -- | -0.00543 | 6.63 | 21.79 | 2166 | -- | -- |
| 110.23 | 0.491 | 5.57 | 0.447 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 76.9 | 0.41 | 5.57 | -- | 0.863 | -- | -- | -- | 0.152 | 6.13 | -- | -- | -- | -- |
| 84.3 | 0.428 | 5.61 | -- | -- | 0.883 | -- | -- | 0.0502 | -- | 23.3 | 5677 | -- | -- |
| 115.5 | 0.502 | 5.58 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 9 | 46.44 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 22 | 46.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 42 | 46.59 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 100 | 46.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 104 | 46.84 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 5 |
| 108 | 46.85 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 110 | 46.85 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 169 | 46.98 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 211 | 47.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 327 | 47.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 335 | 47.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 341 | 47.29 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 355 | 47.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 356 | 47.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 358 | 47.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 423 | 47.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 435 | 47.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 549 | 47.51 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 736 | 47.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 754 | 47.71 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 954 | 47.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 18 |