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Os07g0544900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L28 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0156) R2 : 0.433
β1 : 1.07 (0.0573) R2dD : 0.446 R2D : 0.391
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.168 (0.0334) R2dN8 : 0.0419 R2N8 : -0.0134
σ : 0.294
deviance : 39.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.41 0.272 10.8 1.24 0.162 0.505 0.0957 -0.368 0.251 7.5 22.55 553 -- --
33.47 0.269 10.8 1.21 0.172 0.622 0.0229 -- 0.235 8.17 22.04 418 -- --
33.43 0.269 10.8 1.24 0.161 0.524 -- -0.321 0.253 7.51 22.52 523 -- --
33.45 0.269 10.8 1.2 0.168 0.633 -- -- 0.239 8.06 22.08 396 -- --
34.82 0.275 10.8 1.25 -- 0.535 -- -0.383 0.261 -- 22.73 538 -- --
37.25 0.286 10.8 1.06 0.206 -- 0.00225 -- 0.165 7.69 -- -- -- --
37.25 0.286 10.8 1.06 0.206 -- -- -- 0.165 7.69 -- -- -- --
34.85 0.275 10.8 1.21 -- 0.639 -- -- 0.259 -- 22.46 527 -- --
66.2 0.379 10.9 -- 0.255 -0.289 -- -- 0.0116 6.53 34.64 56 -- --
39.53 0.294 10.8 1.07 -- -- -- -- 0.168 -- -- -- -- --
67.06 0.383 10.9 -- 0.215 -- -- -- 0.0461 7.34 -- -- -- --
69.14 0.387 10.9 -- -- -0.156 -- -- 0.0315 -- 47.94 13 -- --
69.51 0.389 10.9 -- -- -- -- -- 0.0493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.35 temperature 20.0 270 > th dose independent rect. 3 15
2 31.44 temperature 20.0 10 > th dose independent rect. 3 17
3 31.48 temperature 20.0 10 > th dose independent rect. 5 15
7 31.75 temperature 20.0 10 > th dose independent rect. 14 19
12 31.93 temperature 20.0 10 > th dose independent rect. 12 21
14 31.95 temperature 20.0 270 > th dose independent rect. 11 21
24 32.19 atmosphere 1015.0 10 < th dose dependent rect. 16 17
26 32.21 atmosphere 1015.0 10 < th dose dependent rect. 14 19
31 32.24 atmosphere 995.0 30 > th dose dependent rect. 9 18
47 32.47 atmosphere 995.0 270 > th dose dependent rect. 17 10
56 32.57 temperature 20.0 10 > th dose independent rect. 14 6
58 32.58 temperature 20.0 270 > th dose independent rect. 23 20
61 32.58 humidity 60.0 270 > th dose dependent rect. 23 9
67 32.60 humidity 80.0 270 > th dose independent rect. 23 9
68 32.60 humidity 80.0 90 < th dose independent rect. 23 15
69 32.60 temperature 10.0 10 > th dose dependent rect. 14 19
70 32.61 radiation 1.0 10 > th dose independent rect. 9 5
73 32.62 temperature 20.0 10 > th dose independent rect. 12 8
79 32.64 temperature 20.0 270 > th dose independent rect. 11 8
89 32.69 humidity 80.0 270 > th dose independent rect. 1 7
101 32.72 atmosphere 1015.0 10 < th dose independent rect. 14 19
102 32.73 wind 9.0 4320 < th dose independent rect. 15 6
107 32.74 wind 9.0 4320 < th dose independent rect. 15 13
114 32.76 wind 9.0 4320 > th dose independent rect. 15 14
115 32.76 humidity 70.0 270 > th dose dependent rect. 1 7
117 32.77 wind 9.0 4320 > th dose independent rect. 15 6
121 32.77 humidity 50.0 30 > th dose independent rect. 14 19
126 32.80 humidity 90.0 270 > th dose independent rect. 3 4
127 32.80 humidity 80.0 10 < th dose independent rect. 9 5
128 32.80 wind 9.0 4320 < th dose independent rect. 15 10
132 32.80 radiation 40.0 10 < th dose independent rect. 14 19
140 32.81 temperature 10.0 270 > th dose dependent rect. 3 15
146 32.83 wind 9.0 4320 < th dose independent rect. 17 4
149 32.83 wind 9.0 4320 > th dose independent rect. 15 9
154 32.83 humidity 60.0 90 > th dose dependent sin 5 NA
155 32.83 atmosphere 995.0 10 > th dose dependent rect. 20 9
158 32.83 atmosphere 995.0 10 > th dose dependent rect. 9 20
161 32.84 atmosphere 1000.0 270 > th dose independent rect. 18 9
162 32.84 wind 7.0 4320 > th dose dependent rect. 17 4
176 32.87 wind 9.0 4320 > th dose independent rect. 17 4
180 32.87 wind 9.0 4320 < th dose independent rect. 15 18
185 32.89 temperature 10.0 10 > th dose independent rect. 9 5
187 32.89 atmosphere 995.0 10 > th dose independent rect. 9 5
188 32.89 atmosphere 1015.0 10 < th dose independent rect. 9 5
189 32.89 precipitation 0.1 10 < th dose independent rect. 9 5
191 32.89 temperature 10.0 10 > th dose independent rect. 14 19
192 32.89 precipitation 0.1 10 < th dose dependent rect. 9 5
196 32.90 radiation 1.0 10 > th dose independent rect. 9 7
200 32.90 humidity 80.0 270 > th dose dependent rect. 3 4
216 32.91 wind 7.0 4320 > th dose dependent rect. 16 12
222 32.92 temperature 20.0 10 > th dose independent rect. 23 21
226 32.93 humidity 80.0 90 < th dose independent sin 5 NA
227 32.93 temperature 10.0 1440 > th dose independent rect. 10 5
231 32.93 temperature 10.0 1440 > th dose independent rect. 15 19
241 32.94 radiation 1.0 14400 < th dose dependent rect. 21 7
242 32.94 wind 7.0 4320 > th dose dependent rect. 16 9
250 32.95 atmosphere 1015.0 30 < th dose dependent rect. 12 21
259 32.97 wind 9.0 4320 > th dose independent sin 13 NA
260 32.97 wind 7.0 4320 > th dose independent rect. 17 11
264 32.97 atmosphere 995.0 10 > th dose dependent rect. 20 7
268 32.98 wind 7.0 4320 > th dose independent rect. 17 8
269 32.98 wind 7.0 4320 < th dose independent rect. 17 8
282 32.99 humidity 50.0 30 > th dose independent rect. 9 5
301 33.01 wind 9.0 30 < th dose independent rect. 9 5
314 33.02 wind 1.0 30 > th dose independent rect. 9 5
325 33.03 wind 9.0 4320 < th dose independent sin 13 NA
331 33.03 wind 1.0 270 > th dose dependent rect. 12 7
334 33.04 humidity 50.0 270 > th dose independent rect. 9 1
339 33.04 wind 7.0 270 < th dose independent rect. 17 10
340 33.04 wind 9.0 30 < th dose independent rect. 14 19
342 33.04 temperature 20.0 10 > th dose independent rect. 12 23
349 33.05 wind 7.0 4320 > th dose dependent sin 13 NA
352 33.05 temperature 10.0 270 > th dose dependent rect. 12 20
363 33.07 temperature 10.0 270 > th dose independent rect. 9 1
364 33.07 atmosphere 995.0 270 > th dose independent rect. 9 1
365 33.07 atmosphere 1015.0 270 < th dose independent rect. 9 1
371 33.07 temperature 10.0 270 > th dose independent rect. 10 23
374 33.07 atmosphere 995.0 10 > th dose dependent rect. 20 18
385 33.08 precipitation 0.1 30 < th dose independent rect. 14 19
392 33.08 precipitation 0.1 30 < th dose dependent rect. 14 19
395 33.09 temperature 20.0 10 > th dose independent rect. 3 6
397 33.09 radiation 30.0 90 < th dose independent rect. 3 6
404 33.09 temperature 10.0 30 > th dose dependent rect. 3 17
414 33.10 atmosphere 995.0 10 > th dose independent rect. 14 19
415 33.10 temperature 20.0 270 < th dose independent rect. 5 20
433 33.11 temperature 20.0 270 < th dose independent rect. 6 17
436 33.11 temperature 20.0 720 > th dose independent rect. 5 19
441 33.12 wind 9.0 270 < th dose independent rect. 9 1
458 33.13 precipitation 0.1 270 < th dose independent rect. 9 1
459 33.13 temperature 30.0 270 < th dose independent rect. 17 10
463 33.13 precipitation 0.1 270 < th dose dependent rect. 9 1
473 33.14 radiation 20.0 270 < th dose independent rect. 23 9
492 33.15 atmosphere 995.0 270 > th dose dependent rect. 17 21
496 33.16 temperature 10.0 10 > th dose dependent rect. 3 6
523 33.17 humidity 90.0 30 < th dose dependent rect. 20 18
527 33.18 radiation 1.0 270 < th dose independent rect. 3 5
529 33.18 humidity 60.0 270 > th dose independent rect. 17 10
535 33.18 temperature 10.0 10 > th dose dependent rect. 16 17
537 33.19 humidity 80.0 270 < th dose independent rect. 9 1
543 33.19 atmosphere 1015.0 10 < th dose independent rect. 16 17
544 33.19 wind 9.0 30 < th dose independent rect. 9 18
545 33.19 precipitation 0.1 30 < th dose independent rect. 9 18
550 33.19 humidity 50.0 90 > th dose dependent rect. 3 6
555 33.19 precipitation 0.1 30 < th dose dependent rect. 9 18
557 33.20 wind 9.0 30 < th dose independent rect. 3 6
558 33.20 temperature 10.0 30 > th dose independent rect. 3 6
561 33.20 temperature 30.0 30 < th dose independent rect. 3 6
562 33.20 humidity 50.0 30 > th dose independent rect. 3 6
564 33.20 atmosphere 995.0 30 > th dose independent rect. 3 6
565 33.20 atmosphere 1015.0 30 < th dose independent rect. 3 6
570 33.20 temperature 10.0 30 > th dose independent rect. 9 18
576 33.21 humidity 80.0 10 < th dose independent rect. 9 7
628 33.24 temperature 20.0 270 > th dose independent sin 22 NA
632 33.24 atmosphere 995.0 30 > th dose independent rect. 9 18
637 33.24 radiation 10.0 270 < th dose dependent rect. 17 10
643 33.25 humidity 80.0 90 > th dose independent sin 4 NA
644 33.25 precipitation 0.1 30 < th dose independent rect. 3 6
646 33.25 radiation 10.0 270 < th dose independent rect. 17 10
650 33.25 precipitation 0.1 30 < th dose dependent rect. 3 6
670 33.27 radiation 40.0 10 < th dose independent rect. 16 17
673 33.27 humidity 90.0 90 < th dose dependent sin 6 NA
682 33.27 atmosphere 995.0 270 > th dose dependent rect. 19 17
712 33.29 temperature 10.0 1440 > th dose independent rect. 4 6
715 33.29 atmosphere 995.0 1440 > th dose independent rect. 4 6
716 33.29 atmosphere 1015.0 1440 < th dose independent rect. 4 6
717 33.29 temperature 10.0 10 > th dose independent rect. 9 7
719 33.29 atmosphere 1015.0 10 < th dose independent rect. 9 7
720 33.29 precipitation 0.1 10 < th dose independent rect. 9 7
725 33.29 temperature 10.0 10 > th dose independent rect. 16 17
726 33.29 temperature 10.0 1440 > th dose independent rect. 10 18
734 33.29 precipitation 0.1 10 < th dose dependent rect. 9 7
741 33.30 humidity 80.0 90 < th dose independent rect. 7 7
745 33.30 temperature 20.0 1440 < th dose dependent rect. 5 1
759 33.31 humidity 80.0 270 < th dose independent rect. 23 11
777 33.32 atmosphere 995.0 10 > th dose independent rect. 9 7
846 33.36 wind 9.0 30 < th dose independent rect. 9 7
855 33.36 humidity 90.0 10 < th dose dependent rect. 9 5
863 33.37 wind 1.0 270 > th dose independent rect. 9 1
885 33.37 temperature 10.0 30 > th dose dependent rect. 12 21
888 33.38 wind 3.0 270 > th dose independent rect. 11 8
914 33.39 humidity 50.0 10 > th dose independent rect. 16 17
945 33.41 temperature 20.0 270 < th dose independent sin 22 NA
980 33.42 atmosphere 1010.0 270 < th dose independent rect. 2 16
981 33.42 wind 9.0 10 < th dose independent rect. 16 17