FiT-DB / Search/ Help/ Sample detail
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Os07g0544800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (Ferredoxin-NADP reductase binding protein) (BP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.79 | 0.401 | 15.2 | -1.65 | 0.0682 | 2.41 | -0.78 | -11.3 | -0.745 | 8.84 | 49.34 | 15 | -- | -- |
| 73.53 | 0.402 | 15.1 | -1.56 | 0.0466 | -1.96 | -0.785 | -- | -0.746 | 9.33 | 49.34 | 15 | -- | -- |
| 74.16 | 0.401 | 15.2 | -1.68 | 0.133 | 2.21 | -- | -10.8 | -0.745 | 5.47 | 49.56 | 14 | -- | -- |
| 74.33 | 0.402 | 15.1 | -1.58 | 0.137 | -2.02 | -- | -- | -0.745 | 5.4 | 48 | 16 | -- | -- |
| 75.08 | 0.404 | 15.2 | -1.67 | -- | 2.19 | -- | -10.9 | -0.749 | -- | 48.73 | 19 | -- | -- |
| 84.13 | 0.43 | 15.1 | -1.64 | 0.0708 | -- | 0.953 | -- | -0.734 | 23.6 | -- | -- | -- | -- |
| 86.91 | 0.437 | 15.1 | -1.68 | 0.162 | -- | -- | -- | -0.741 | 4.03 | -- | -- | -- | -- |
| 75.23 | 0.404 | 15.1 | -1.57 | -- | -2.06 | -- | -- | -0.747 | -- | 48 | 16 | -- | -- |
| 138.5 | 0.548 | 15.1 | -- | 0.0896 | -2.63 | -- | -- | -0.58 | 5.23 | 47.81 | 27 | -- | -- |
| 88.34 | 0.439 | 15.1 | -1.68 | -- | -- | -- | -- | -0.737 | -- | -- | -- | -- | -- |
| 161.63 | 0.595 | 15.1 | -- | 0.129 | -- | -- | -- | -0.554 | 4.23 | -- | -- | -- | -- |
| 138.88 | 0.549 | 15.1 | -- | -- | -2.65 | -- | -- | -0.58 | -- | 48 | 28 | -- | -- |
| 162.54 | 0.595 | 15.1 | -- | -- | -- | -- | -- | -0.551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 2 | 62.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 3 | 62.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 4 | 62.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 9 | 64.30 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 10 | 64.35 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 16 | 64.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 19 | 65.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 20 | 65.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 21 | 65.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 22 | 65.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 23 | 65.29 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 35 | 65.57 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 43 | 65.67 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 46 | 65.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 55 | 65.79 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 63 | 65.87 | wind | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 71 | 65.91 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 72 | 65.91 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 92 | 66.10 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 94 | 66.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 95 | 66.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 99 | 66.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 118 | 66.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 148 | 66.36 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 149 | 66.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 156 | 66.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 159 | 66.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 172 | 66.49 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 179 | 66.53 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 186 | 66.57 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 189 | 66.60 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 217 | 66.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 271 | 66.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 289 | 66.98 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 331 | 67.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 368 | 67.21 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 8 | NA |
| 384 | 67.25 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 410 | 67.35 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 413 | 67.36 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 415 | 67.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 473 | 67.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 475 | 67.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 476 | 67.43 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 478 | 67.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 484 | 67.44 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 486 | 67.44 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 489 | 67.45 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 503 | 67.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 532 | 67.52 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 564 | 67.59 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 575 | 67.60 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 589 | 67.60 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 606 | 67.63 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 610 | 67.63 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 611 | 67.63 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 619 | 67.64 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 620 | 67.64 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 625 | 67.64 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 641 | 67.66 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 644 | 67.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 645 | 67.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 653 | 67.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 656 | 67.69 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 660 | 67.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 675 | 67.72 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 683 | 67.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 684 | 67.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 695 | 67.75 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 8 | NA |
| 697 | 67.75 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 699 | 67.75 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 728 | 67.79 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 8 | NA |
| 729 | 67.79 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 738 | 67.80 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 742 | 67.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 770 | 67.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 775 | 67.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 776 | 67.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 11 |
| 800 | 67.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 803 | 67.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 856 | 67.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 876 | 67.99 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 914 | 68.01 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 918 | 68.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 921 | 68.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 930 | 68.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 961 | 68.07 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 973 | 68.09 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 991 | 68.11 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
