Os07g0542600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0542600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 692.55 | 1.24 | 9.16 | -0.509 | 3.99 | 4.07 | -0.341 | 1.39 | -0.152 | 1.85 | 71 | 1213 | -- | -- |
| 695.61 | 1.23 | 9.13 | -0.297 | 4.02 | 4.18 | -0.561 | -- | -0.0819 | 1.81 | 70.79 | 1203 | -- | -- |
| 692.56 | 1.23 | 9.17 | -0.514 | 4.02 | 4.09 | -- | 1.49 | -0.152 | 1.8 | 70.69 | 1203 | -- | -- |
| 696.89 | 1.23 | 9.13 | -0.282 | 4.03 | 4.19 | -- | -- | -0.0813 | 1.79 | 70.7 | 1202 | -- | -- |
| 1109.15 | 1.55 | 9.12 | -0.792 | -- | 4.85 | -- | 1.79 | -0.0602 | -- | 74.92 | 1683 | -- | -- |
| 1304.57 | 1.69 | 9.25 | -1.24 | 3.02 | -- | -1.54 | -- | -0.648 | 2.27 | -- | -- | -- | -- |
| 1313.26 | 1.7 | 9.24 | -1.2 | 3.01 | -- | -- | -- | -0.638 | 2.21 | -- | -- | -- | -- |
| 1097.15 | 1.54 | 9.1 | -0.622 | -- | 5.56 | -- | -- | -0.13 | -- | 75 | 1688 | -- | -- |
| 698.92 | 1.23 | 9.13 | -- | 4.03 | 4.23 | -- | -- | -0.0454 | 1.78 | 70.62 | 1202 | -- | -- |
| 1852.9 | 2.01 | 9.22 | -1.07 | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
| 1351.19 | 1.72 | 9.21 | -- | 2.99 | -- | -- | -- | -0.504 | 2.2 | -- | -- | -- | -- |
| 1103.18 | 1.55 | 9.1 | -- | -- | 5.72 | -- | -- | -0.0335 | -- | 75.23 | 1676 | -- | -- |
| 1883.29 | 2.03 | 9.19 | -- | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 688.44 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 4 | 709.31 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 8 | 712.30 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 14 | 717.71 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 16 | 720.35 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 40 | 728.18 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 64 | 733.30 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 80 | 736.02 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 111 | 739.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 112 | 739.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 117 | 739.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 120 | 739.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 125 | 739.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 133 | 740.46 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 147 | 740.52 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 154 | 741.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 172 | 742.17 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 7 |
| 228 | 745.14 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 229 | 745.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 231 | 745.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 234 | 745.34 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 249 | 745.98 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 284 | 747.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 285 | 747.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 360 | 749.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 367 | 749.20 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 421 | 750.05 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 443 | 750.29 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 451 | 750.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 454 | 750.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 460 | 750.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 471 | 750.88 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 487 | 751.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 549 | 752.32 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 561 | 752.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 578 | 752.89 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 588 | 752.98 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 651 | 753.69 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 706 | 754.37 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 733 | 754.81 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 741 | 754.89 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |
| 743 | 754.93 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 801 | 755.51 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 812 | 755.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 861 | 756.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 870 | 756.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 1000 | 757.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 18 |