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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0542400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.45 (0.0639) R2 : 0.657
β1 : -1.88 (0.234) R2dD : 0.0511 R2D : 0.0268
β2 : 4.4 (0.163) R2dC : 0.645 R2C : 0.311
β3 : -3.76 (0.231) R2dE : 0.249 R2E : -0.0985
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.24 (0.138) R2dN8 : 0.0848 R2N8 : -0.0146
σ : 1.19
deviance : 649.91
__
_____
C
peak time of C : 0.495
E
wheather : humidity
threshold : 79
memory length : 858
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.36
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
648.99 1.2 6.46 -1.96 4.39 -3.69 0.0259 -0.993 -1.25 0.476 78.99 848 5.38 --
649.84 1.19 6.46 -1.89 4.4 -3.74 -0.179 -- -1.25 0.48 79 856 5.37 --
648.9 1.19 6.46 -1.96 4.4 -3.68 -- -0.955 -1.24 0.494 79 856 5.41 --
649.91 1.19 6.45 -1.88 4.4 -3.76 -- -- -1.24 0.495 79 858 5.36 --
1448.19 1.77 6.33 -1.04 -- -3.49 -- -0.187 -0.967 -- 79 1587 3.84 --
1028.06 1.5 6.34 -2.34 3.37 -- -0.293 -- -0.794 0.369 -- -- -- --
1028.43 1.5 6.34 -2.33 3.37 -- -- -- -0.793 0.366 -- -- -- --
1440.37 1.77 6.26 -1.2 -- -3.52 -- -- -0.88 -- 79 1586 3.56 --
737.92 1.27 6.41 -- 4.28 -4.07 -- -- -1.06 0.378 78.25 869 4.91 --
1743.71 1.95 6.27 -2.22 -- -- -- -- -0.739 -- -- -- -- --
1171.49 1.6 6.28 -- 3.34 -- -- -- -0.533 0.329 -- -- -- --
1325.85 1.7 6.21 -- -- -5.57 -- -- -0.455 -- 90.1 1854 0.000149 --
1873.26 2.02 6.21 -- -- -- -- -- -0.493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 677.65 humidity 80 720 < th dose dependent sin 12 NA
3 681.68 humidity 80 720 < th dose dependent rect. 18 15
8 692.88 humidity 50 720 > th dose dependent rect. 17 4
9 692.92 humidity 80 720 < th dose dependent rect. 18 7
15 696.04 humidity 80 720 < th dose dependent rect. 17 11
19 696.92 humidity 70 720 > th dose dependent rect. 19 1
85 714.78 humidity 70 720 > th dose independent sin 12 NA
90 715.54 humidity 70 720 < th dose independent sin 12 NA
91 715.54 humidity 80 720 > th dose independent rect. 19 1
102 717.60 temperature 30 14400 > th dose dependent rect. 15 1
105 717.75 humidity 80 720 > th dose independent rect. 15 7
113 718.81 temperature 30 14400 > th dose dependent rect. 15 3
142 720.04 humidity 70 1440 > th dose independent rect. 17 22
177 721.85 humidity 70 720 > th dose independent rect. 16 4
182 722.23 humidity 70 1440 < th dose independent rect. 9 22
184 722.29 humidity 70 720 > th dose independent rect. 16 13
186 722.40 humidity 70 1440 < th dose independent rect. 9 11
195 722.40 radiation 40 1440 > th dose independent rect. 14 19
211 723.17 temperature 30 14400 < th dose independent rect. 17 1
212 723.19 humidity 70 1440 > th dose independent rect. 9 22
213 723.22 temperature 30 14400 > th dose independent rect. 17 1
214 723.32 humidity 70 1440 > th dose independent rect. 9 15
220 723.41 humidity 70 1440 > th dose independent rect. 9 18
226 723.48 temperature 30 14400 > th dose dependent sin 13 NA
231 723.71 temperature 25 14400 > th dose dependent rect. 22 2
251 724.19 temperature 30 14400 < th dose independent rect. 16 8
254 724.27 temperature 30 14400 < th dose independent rect. 16 15
261 724.33 temperature 30 14400 < th dose independent rect. 16 3
264 724.34 temperature 30 14400 < th dose independent rect. 16 11
286 724.57 humidity 90 1440 < th dose dependent rect. 11 22
305 724.88 radiation 40 1440 > th dose independent rect. 14 1
339 725.26 temperature 30 14400 < th dose independent rect. 11 2
363 725.51 humidity 90 1440 < th dose dependent rect. 2 21
365 725.65 radiation 10 1440 > th dose independent rect. 13 21
372 725.87 humidity 80 720 > th dose independent rect. 7 15
401 726.29 humidity 70 1440 < th dose independent sin 18 NA
403 726.31 temperature 30 14400 > th dose independent rect. 11 2
430 727.20 humidity 70 1440 < th dose independent rect. 17 22
471 728.01 temperature 30 720 < th dose independent rect. 17 10
495 728.70 humidity 90 1440 < th dose dependent no NA NA
509 728.92 temperature 30 14400 < th dose independent rect. 11 13
510 728.94 radiation 10 1440 > th dose independent sin 12 NA
516 728.95 temperature 30 14400 < th dose independent rect. 11 20
518 728.96 temperature 30 14400 < th dose independent rect. 11 16
524 728.97 temperature 30 14400 < th dose independent rect. 11 8
551 729.04 humidity 80 1440 < th dose dependent rect. 6 23
560 729.17 humidity 70 1440 > th dose independent rect. 11 23
566 729.24 temperature 30 14400 > th dose independent rect. 11 8
580 729.25 humidity 70 1440 > th dose independent sin 18 NA
584 729.31 humidity 70 720 > th dose independent rect. 16 11
630 729.73 temperature 30 14400 < th dose independent sin 14 NA
631 729.73 radiation 40 1440 < th dose independent rect. 14 19
641 729.87 temperature 30 14400 > th dose independent sin 14 NA
726 730.70 humidity 50 1440 > th dose dependent rect. 5 18
730 730.77 humidity 50 1440 > th dose dependent rect. 3 20
738 730.85 humidity 50 720 > th dose dependent rect. 17 10
763 731.14 humidity 50 720 > th dose dependent rect. 15 20
822 731.59 humidity 70 1440 > th dose independent rect. 5 19
825 731.61 humidity 70 1440 > th dose independent rect. 2 22
840 731.67 humidity 70 1440 > th dose independent rect. 5 22
855 731.71 humidity 70 1440 > th dose independent no NA NA
870 731.73 humidity 70 1440 > th dose independent rect. 22 23
906 731.82 humidity 70 1440 < th dose independent no NA NA
907 731.82 humidity 70 1440 < th dose independent rect. 6 14