Os07g0541700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase 5.
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Os07g0541700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.47 | 0.784 | 7.73 | 1.09 | 2.4 | -1.81 | 0.318 | -0.51 | 0.516 | 6.23 | 25.64 | 1358 | -- | -- |
| 278.57 | 0.777 | 7.72 | 1.22 | 2.39 | -1.85 | 0.37 | -- | 0.533 | 6.23 | 25.68 | 1357 | -- | -- |
| 278.71 | 0.778 | 7.73 | 1.1 | 2.4 | -1.8 | -- | -0.461 | 0.514 | 6.25 | 25.7 | 1357 | -- | -- |
| 278.79 | 0.778 | 7.71 | 1.23 | 2.4 | -1.85 | -- | -- | 0.539 | 6.25 | 25.7 | 1357 | -- | -- |
| 315.41 | 0.827 | 7.69 | 1.35 | -- | -3.65 | -- | -0.0498 | 0.894 | -- | 23.54 | 485 | -- | -- |
| 425.35 | 0.967 | 7.75 | 0.597 | 2.29 | -- | -0.0559 | -- | 0.384 | 6.61 | -- | -- | -- | -- |
| 425.36 | 0.966 | 7.75 | 0.596 | 2.29 | -- | -- | -- | 0.384 | 6.61 | -- | -- | -- | -- |
| 315.26 | 0.827 | 7.69 | 1.37 | -- | -3.67 | -- | -- | 0.882 | -- | 23.54 | 488 | -- | -- |
| 311.99 | 0.823 | 7.8 | -- | 2.37 | -1.64 | -- | -- | 0.172 | 6.16 | 27.8 | 1234 | -- | -- |
| 699.5 | 1.24 | 7.79 | 0.651 | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
| 434.73 | 0.975 | 7.76 | -- | 2.3 | -- | -- | -- | 0.318 | 6.59 | -- | -- | -- | -- |
| 361.52 | 0.886 | 7.74 | -- | -- | -3.43 | -- | -- | 0.648 | -- | 24.08 | 479 | -- | -- |
| 710.7 | 1.24 | 7.81 | -- | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 4 | 272.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 7 | 273.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 8 | 273.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 40 | 276.00 | temperature | 25 | 720 | > th | dose dependent | sin | 9 | NA |
| 53 | 276.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 63 | 276.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 244 | 278.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 254 | 278.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 257 | 278.94 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 336 | 280.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 14 |
| 509 | 281.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 643 | 282.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 786 | 284.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |