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Os07g0541200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0275) R2 : 0.716
β1 : 1.3 (0.101) R2dD : 0.103 R2D : 0.0835
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.34 (0.117) R2dE : 0.524 R2E : 0.575
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.509 (0.0594) R2dN8 : 0.0658 R2N8 : 0.0499
σ : 0.514
deviance : 121.7
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.188
memory length : 2283
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.75 0.481 11.1 1.67 1.69 -3.24 -1.03 -5.54 0.585 17.7 0.7583 1381 -- --
122.79 0.516 11.1 1.14 1.5 -2.52 -1.35 -- 0.558 17.1 0.911 1304 -- --
106.03 0.48 11.1 1.7 1.72 -3.47 -- -6.27 0.557 18 0.5434 1396 -- --
118.95 0.508 11.2 1.23 1.68 -2.07 -- -- 0.489 18.1 2.135 1374 -- --
142.79 0.557 11.1 2.01 -- -3.38 -- -5.21 0.61 -- 1.166 2352 -- --
168.34 0.608 11.1 1.61 1.81 -- -0.236 -- 0.745 18.8 -- -- -- --
168.47 0.608 11.1 1.62 1.81 -- -- -- 0.744 18.8 -- -- -- --
121.7 0.514 11.1 1.3 -- -3.34 -- -- 0.509 -- 2.188 2283 -- --
153.83 0.578 11.1 -- 1.7 -2.46 -- -- 0.379 18.2 1.721 1388 -- --
340.54 0.862 11.1 1.58 -- -- -- -- 0.709 -- -- -- -- --
237.29 0.721 11.2 -- 1.79 -- -- -- 0.564 18.9 -- -- -- --
156.75 0.583 11.1 -- -- -3.55 -- -- 0.38 -- 1.039 2315 -- --
406.08 0.941 11.1 -- -- -- -- -- 0.534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.58 temperature 25 720 < th dose independent rect. 16 7
22 105.51 temperature 25 720 < th dose independent sin 16 NA
25 106.44 radiation 1 720 < th dose dependent sin 14 NA
30 106.75 radiation 1 720 > th dose independent rect. 15 15
35 107.44 temperature 25 720 > th dose independent rect. 15 9
55 108.97 radiation 1 720 > th dose independent sin 14 NA
56 109.02 radiation 1 720 < th dose dependent rect. 16 10
58 109.27 temperature 25 720 < th dose independent rect. 10 15
59 109.30 radiation 1 1440 < th dose dependent rect. 11 20
88 110.58 radiation 1 43200 < th dose dependent rect. 19 10
91 110.67 radiation 1 43200 < th dose dependent rect. 22 7
94 110.68 temperature 30 720 < th dose dependent rect. 17 5
100 110.81 radiation 1 43200 < th dose dependent rect. 4 1
130 111.87 radiation 1 720 < th dose independent sin 14 NA
143 112.12 radiation 1 1440 < th dose dependent rect. 5 18
144 112.13 radiation 1 1440 < th dose dependent rect. 5 20
149 112.15 radiation 1 1440 < th dose dependent rect. 5 16
182 112.31 radiation 1 1440 < th dose dependent rect. 24 23
184 112.32 radiation 1 1440 < th dose dependent rect. 22 23
185 112.33 radiation 1 1440 < th dose dependent no NA NA
187 112.33 radiation 1 1440 < th dose dependent rect. 24 21
196 112.37 radiation 1 1440 < th dose dependent rect. 20 23
211 112.42 radiation 1 1440 < th dose dependent rect. 17 23
223 112.60 atmosphere 1005 43200 > th dose independent rect. 18 1
227 112.64 radiation 1 1440 > th dose independent rect. 12 19
244 112.98 radiation 1 1440 < th dose independent rect. 11 20
248 113.06 atmosphere 1005 43200 < th dose independent rect. 18 1
250 113.07 wind 7 43200 > th dose independent rect. 12 4
254 113.16 atmosphere 1005 43200 > th dose independent rect. 16 4
256 113.19 wind 7 43200 > th dose independent rect. 10 5
259 113.20 wind 5 43200 > th dose dependent rect. 12 2
260 113.21 temperature 20 14400 > th dose independent rect. 4 1
268 113.23 temperature 20 14400 < th dose independent rect. 4 1
269 113.23 wind 7 43200 > th dose dependent rect. 14 2
271 113.24 atmosphere 1005 43200 < th dose independent rect. 16 1
273 113.28 temperature 25 720 > th dose independent sin 17 NA
281 113.40 radiation 1 720 > th dose independent rect. 15 23
282 113.42 wind 7 43200 < th dose independent rect. 12 1
287 113.46 wind 7 43200 < th dose independent rect. 12 3
289 113.47 atmosphere 1005 43200 < th dose independent rect. 16 3
290 113.47 wind 7 43200 < th dose independent rect. 10 5
298 113.57 radiation 1 720 < th dose independent rect. 16 9
314 113.81 radiation 1 14400 > th dose independent rect. 18 11
355 114.21 radiation 1 14400 > th dose independent rect. 18 1
369 114.24 radiation 40 14400 < th dose dependent rect. 18 5
370 114.26 radiation 1 43200 < th dose independent rect. 18 5
372 114.27 radiation 1 43200 < th dose independent rect. 18 3
402 114.38 radiation 20 14400 < th dose dependent rect. 18 3
404 114.39 atmosphere 1005 43200 < th dose independent rect. 12 7
428 114.53 humidity 90 43200 > th dose independent rect. 18 6
456 114.63 humidity 90 43200 > th dose independent rect. 23 1
475 114.72 humidity 90 43200 < th dose independent rect. 18 1
495 114.83 humidity 90 43200 > th dose dependent rect. 20 5
512 114.95 humidity 90 43200 > th dose dependent rect. 23 1
518 114.98 humidity 80 43200 < th dose independent rect. 14 2
523 115.00 wind 7 43200 > th dose dependent rect. 10 7
524 115.01 temperature 25 4320 > th dose independent rect. 17 2
558 115.18 radiation 1 1440 < th dose dependent sin 0 NA
566 115.22 wind 9 14400 > th dose independent rect. 16 1
567 115.22 temperature 25 4320 < th dose independent rect. 17 2
573 115.23 temperature 10 720 > th dose dependent rect. 15 8
589 115.32 humidity 80 43200 > th dose independent rect. 14 1
620 115.41 temperature 10 14400 > th dose dependent rect. 2 1
627 115.42 temperature 30 14400 < th dose dependent rect. 2 1
630 115.43 wind 1 43200 < th dose dependent rect. 19 10
631 115.44 temperature 25 14400 > th dose independent rect. 11 1
640 115.46 humidity 90 43200 > th dose dependent rect. 17 10
658 115.55 humidity 90 43200 > th dose independent rect. 18 2
663 115.56 wind 1 43200 < th dose dependent rect. 21 8
666 115.57 humidity 90 43200 < th dose independent rect. 17 8
687 115.64 temperature 25 720 > th dose dependent rect. 17 15
733 115.79 temperature 20 720 > th dose dependent rect. 15 8
758 115.86 radiation 1 720 < th dose independent rect. 3 23
777 115.92 temperature 25 720 > th dose dependent rect. 17 8
801 115.99 radiation 1 1440 < th dose dependent rect. 18 5
829 116.05 radiation 1 1440 < th dose dependent rect. 18 3
847 116.09 humidity 90 43200 > th dose dependent sin 15 NA
880 116.16 temperature 25 14400 < th dose independent rect. 11 1
928 116.28 humidity 90 43200 > th dose dependent rect. 20 1
929 116.28 radiation 1 720 < th dose dependent rect. 16 3
931 116.28 temperature 20 14400 < th dose dependent rect. 21 6
992 116.41 radiation 1 43200 > th dose dependent rect. 18 1