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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0541000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.28 (0.039) R2 : 0.674
β1 : 4.42 (0.148) R2dD : 0.715 R2D : 0.533
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.56 (0.118) R2dE : 0.138 R2E : -0.0221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.307 (0.0844) R2dN8 : 0.0131 R2N8 : -0.0317
σ : 0.728
deviance : 244.02
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.84
memory length : 1308
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.89 0.717 5.27 4.62 0.324 -1.53 1.53 0.74 0.363 16.6 24.7 1374 -- --
233.26 0.711 5.28 4.44 0.29 -1.46 1.49 -- 0.318 16.4 24.87 1374 -- --
237.68 0.718 5.28 4.44 0.354 -1.53 -- 0.13 0.309 18.5 25 1277 -- --
237.64 0.718 5.3 4.43 0.348 -1.55 -- -- 0.295 18.6 25 1275 -- --
244 0.728 5.27 4.5 -- -1.6 -- 0.293 0.331 -- 24.8 1309 -- --
316.57 0.834 5.34 3.9 0.469 -- 1.8 -- 0.108 16.2 -- -- -- --
325.37 0.845 5.33 3.92 0.49 -- -- -- 0.118 16.7 -- -- -- --
244.02 0.728 5.28 4.42 -- -1.56 -- -- 0.307 -- 24.84 1308 -- --
704.18 1.24 5.46 -- 0.349 -1.08 -- -- -0.449 18.4 34.78 1329 -- --
338.14 0.859 5.33 3.9 -- -- -- -- 0.105 -- -- -- -- --
730.67 1.26 5.43 -- 0.419 -- -- -- -0.319 16.9 -- -- -- --
710.61 1.24 5.46 -- -- -1.06 -- -- -0.463 -- 34.76 1243 -- --
739.92 1.27 5.43 -- -- -- -- -- -0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.36 humidity 70.0 14400 > th dose independent rect. 19 2
2 220.40 humidity 70.0 14400 < th dose independent rect. 19 1
3 220.44 humidity 70.0 14400 < th dose independent rect. 19 12
4 220.54 humidity 70.0 14400 > th dose independent rect. 19 10
5 220.55 humidity 70.0 14400 > th dose independent rect. 19 8
25 224.41 radiation 10.0 14400 < th dose independent rect. 16 14
29 225.25 radiation 10.0 14400 < th dose independent rect. 16 3
31 225.25 radiation 10.0 14400 < th dose independent rect. 16 11
32 225.26 radiation 10.0 14400 < th dose independent rect. 16 9
42 225.60 temperature 20.0 1440 > th dose dependent rect. 13 4
44 225.72 radiation 10.0 14400 > th dose dependent rect. 16 15
47 225.83 radiation 10.0 14400 < th dose independent sin 13 NA
72 226.74 radiation 1.0 14400 > th dose dependent rect. 17 13
85 227.33 humidity 90.0 43200 > th dose dependent rect. 21 1
96 227.36 radiation 40.0 14400 > th dose dependent rect. 13 20
102 227.51 humidity 90.0 43200 < th dose independent rect. 20 2
104 227.53 radiation 40.0 14400 > th dose dependent rect. 13 1
115 227.87 radiation 20.0 14400 > th dose dependent rect. 15 17
118 228.06 radiation 40.0 14400 > th dose dependent sin 13 NA
122 228.09 radiation 1.0 14400 > th dose dependent rect. 4 2
134 228.19 radiation 40.0 14400 > th dose dependent rect. 13 3
152 228.24 radiation 40.0 14400 < th dose independent sin 13 NA
177 228.59 radiation 40.0 14400 < th dose independent rect. 13 20
197 229.08 radiation 20.0 14400 > th dose dependent rect. 16 1
230 229.24 humidity 90.0 43200 > th dose independent rect. 21 1
277 229.55 radiation 30.0 14400 < th dose dependent rect. 16 15
304 229.79 temperature 25.0 1440 > th dose dependent rect. 13 15
350 230.17 wind 5.0 43200 > th dose independent rect. 5 9
352 230.18 wind 5.0 43200 > th dose independent rect. 7 7
375 230.29 wind 9.0 43200 > th dose independent rect. 19 4
394 230.31 wind 9.0 43200 < th dose independent rect. 19 4
404 230.40 wind 9.0 43200 > th dose independent rect. 19 11
415 230.45 wind 9.0 43200 < th dose independent rect. 19 11
449 230.54 wind 5.0 43200 < th dose independent rect. 5 9
452 230.57 radiation 40.0 14400 < th dose independent rect. 13 5
453 230.57 radiation 40.0 14400 < th dose independent rect. 13 14
454 230.58 precipitation 0.1 43200 < th dose independent rect. 20 2
462 230.58 precipitation 0.1 43200 < th dose dependent rect. 20 2
475 230.61 precipitation 0.1 43200 < th dose independent rect. 17 5
476 230.61 precipitation 0.1 43200 < th dose dependent rect. 17 5
487 230.63 wind 5.0 43200 < th dose independent rect. 7 7
494 230.68 precipitation 0.1 43200 > th dose independent rect. 17 5
499 230.72 precipitation 0.1 43200 > th dose independent rect. 20 2
505 230.77 precipitation 0.1 43200 < th dose independent rect. 17 2
508 230.77 precipitation 0.1 43200 < th dose dependent rect. 17 2
539 230.84 precipitation 0.1 43200 > th dose independent rect. 17 2
545 230.87 temperature 25.0 1440 > th dose dependent sin 17 NA
549 230.88 wind 5.0 43200 > th dose independent rect. 11 1
572 231.03 radiation 20.0 14400 < th dose dependent rect. 2 4
579 231.06 radiation 1.0 1440 < th dose independent rect. 11 19
595 231.07 precipitation 0.1 43200 > th dose dependent rect. 17 6
598 231.10 radiation 20.0 14400 < th dose dependent rect. 4 2
605 231.12 radiation 20.0 14400 < th dose dependent rect. 22 8
614 231.15 precipitation 0.1 43200 > th dose dependent rect. 14 9
629 231.20 radiation 10.0 14400 < th dose independent rect. 2 8
639 231.21 radiation 10.0 14400 < th dose independent rect. 4 6
651 231.24 radiation 1.0 14400 > th dose independent rect. 17 1
661 231.27 precipitation 0.1 43200 > th dose dependent rect. 21 1
691 231.42 precipitation 0.1 43200 > th dose dependent rect. 20 3
704 231.48 radiation 1.0 1440 > th dose independent rect. 10 20
705 231.48 precipitation 0.1 43200 > th dose dependent rect. 10 9
716 231.53 wind 5.0 43200 < th dose independent rect. 11 1
724 231.56 precipitation 0.1 43200 > th dose dependent rect. 17 9
732 231.60 precipitation 0.1 43200 < th dose independent rect. 14 5
735 231.60 precipitation 0.1 43200 < th dose dependent rect. 14 5
742 231.62 precipitation 0.1 43200 > th dose independent rect. 14 5
751 231.62 radiation 10.0 14400 < th dose independent rect. 8 23
773 231.67 precipitation 0.1 43200 < th dose independent rect. 14 8
774 231.67 precipitation 0.1 43200 < th dose dependent rect. 14 8
784 231.70 radiation 10.0 14400 < th dose independent rect. 24 19
794 231.71 radiation 10.0 14400 < th dose independent no NA NA
796 231.71 radiation 10.0 14400 < th dose independent rect. 4 15
847 231.75 precipitation 0.1 43200 > th dose dependent rect. 11 11
872 231.80 radiation 40.0 14400 < th dose dependent rect. 17 1
883 231.83 precipitation 0.1 43200 > th dose dependent rect. 14 11
901 231.87 precipitation 0.1 43200 > th dose dependent rect. 14 5
910 231.88 radiation 20.0 14400 < th dose dependent rect. 17 10
977 232.00 radiation 30.0 14400 < th dose independent rect. 6 4
978 232.00 radiation 30.0 14400 < th dose independent rect. 24 10