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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0540500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0233) R2 : 0.000488
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0232 (0.0491) R2dN8 : 0.000631 R2N8 : 0.000488
σ : 0.439
deviance : 88.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.86 0.422 2.93 -0.272 0.139 -0.501 -0.157 2.01 -0.0121 12.8 1 16 -- --
84.22 0.427 2.91 -0.197 0.132 -0.351 -0.00895 -- 0.0077 12.2 1.082 16 -- --
80.96 0.419 2.93 -0.276 0.14 -0.501 -- 1.95 -0.0121 12.9 1.021 16 -- --
84.22 0.427 2.91 -0.196 0.133 -0.352 -- -- 0.00919 12.2 1.079 16 -- --
82.1 0.422 2.93 -0.273 -- -0.445 -- 1.92 -0.0147 -- 1.026 16 -- --
86.87 0.437 2.91 -0.15 0.122 -- -0.102 -- 0.00553 9.21 -- -- -- --
86.91 0.437 2.91 -0.154 0.122 -- -- -- 0.0055 9.29 -- -- -- --
85.29 0.43 2.91 -0.195 -- -0.311 -- -- 0.0071 -- 1.054 16 -- --
85.22 0.43 2.9 -- 0.132 -0.323 -- -- 0.0305 12.1 1.001 16 -- --
87.77 0.438 2.91 -0.154 -- -- -- -- 0.00602 -- -- -- -- --
87.53 0.438 2.9 -- 0.122 -- -- -- 0.0226 9.39 -- -- -- --
86.28 0.433 2.9 -- -- -0.285 -- -- 0.0283 -- 1.067 16 -- --
88.4 0.439 2.91 -- -- -- -- -- 0.0232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.76 temperature 25.0 90 > th dose dependent rect. 2 1
2 70.63 temperature 25.0 90 > th dose independent rect. 2 1
3 70.79 wind 9.0 30 < th dose independent rect. 3 23
5 71.64 radiation 10.0 43200 < th dose dependent rect. 3 1
9 71.68 wind 9.0 1440 < th dose independent rect. 3 1
10 71.68 temperature 10.0 1440 > th dose independent rect. 3 1
13 71.68 temperature 30.0 1440 < th dose independent rect. 3 1
17 71.68 humidity 50.0 1440 > th dose independent rect. 3 1
26 71.68 atmosphere 995.0 1440 > th dose independent rect. 3 1
27 71.68 radiation 1.0 1440 < th dose independent rect. 3 1
47 71.68 temperature 10.0 1440 > th dose independent rect. 4 23
50 71.68 radiation 1.0 1440 < th dose dependent rect. 3 1
67 71.78 atmosphere 1005.0 30 > th dose dependent rect. 2 1
69 71.79 wind 3.0 30 < th dose dependent rect. 2 1
72 71.82 atmosphere 1005.0 30 > th dose independent rect. 2 1
75 71.84 wind 3.0 30 < th dose independent rect. 2 1
78 71.85 humidity 80.0 30 > th dose independent rect. 2 1
80 71.87 humidity 70.0 30 > th dose dependent rect. 2 1
85 71.88 humidity 50.0 30 > th dose dependent rect. 2 1
89 71.89 temperature 10.0 30 > th dose independent rect. 2 1
91 71.89 temperature 30.0 30 < th dose independent rect. 2 1
92 71.89 humidity 50.0 30 > th dose independent rect. 2 1
95 71.89 atmosphere 995.0 30 > th dose independent rect. 2 1
97 71.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
99 71.89 radiation 1.0 30 < th dose independent rect. 2 1
104 71.89 precipitation 0.1 30 < th dose independent rect. 2 1
105 71.89 temperature 10.0 30 > th dose independent rect. 3 23
106 71.89 radiation 1.0 30 < th dose dependent rect. 2 1
111 71.89 precipitation 0.1 30 < th dose dependent rect. 2 1
117 72.02 atmosphere 1015.0 30 < th dose dependent rect. 2 1
119 72.06 atmosphere 995.0 30 > th dose independent rect. 3 23
123 72.19 temperature 30.0 30 < th dose dependent rect. 2 1
131 72.33 wind 1.0 30 > th dose independent rect. 2 1
147 72.65 precipitation 0.1 30 < th dose independent rect. 3 23
148 72.65 precipitation 0.1 30 < th dose dependent rect. 3 23
187 74.77 atmosphere 1015.0 30 < th dose independent rect. 3 23
204 76.61 humidity 50.0 30 > th dose independent rect. 3 23
211 76.99 temperature 25.0 270 > th dose independent rect. 23 4
213 77.18 temperature 25.0 270 > th dose dependent rect. 23 4
266 78.29 humidity 90.0 90 < th dose independent rect. 2 1
278 78.80 temperature 30.0 30 < th dose independent rect. 3 23
303 79.32 wind 1.0 10 < th dose independent rect. 9 18
334 79.82 wind 9.0 30 < th dose dependent rect. 3 23
349 79.93 atmosphere 1015.0 1440 < th dose independent rect. 3 1
352 80.00 wind 1.0 10 < th dose independent rect. 11 16
363 80.23 radiation 20.0 10 < th dose dependent rect. 3 23
370 80.39 wind 9.0 10 > th dose independent rect. 15 1
380 80.39 wind 9.0 10 > th dose dependent rect. 15 1
391 80.41 temperature 10.0 30 > th dose dependent rect. 3 23
406 80.57 wind 1.0 30 > th dose independent rect. 3 23
453 81.00 wind 1.0 10 > th dose independent sin 16 NA
470 81.14 radiation 10.0 10 < th dose independent rect. 3 23
475 81.16 wind 9.0 720 < th dose independent rect. 23 16
483 81.20 radiation 40.0 10 < th dose dependent rect. 3 23
534 81.60 temperature 15.0 90 > th dose independent rect. 3 8
569 81.78 wind 1.0 10 > th dose independent rect. 16 19
580 81.83 wind 1.0 10 > th dose independent no NA NA
611 81.90 humidity 60.0 90 > th dose independent rect. 3 8
613 81.91 wind 1.0 10 < th dose independent rect. 2 8
615 81.92 humidity 90.0 270 < th dose independent rect. 23 3
616 81.92 wind 7.0 90 < th dose independent rect. 3 8
623 81.95 wind 3.0 30 < th dose dependent rect. 22 5
646 82.08 temperature 10.0 90 > th dose dependent rect. 3 8
651 82.10 atmosphere 995.0 90 > th dose independent rect. 3 8
653 82.10 atmosphere 1015.0 90 < th dose independent rect. 3 8
654 82.10 atmosphere 1015.0 720 < th dose independent rect. 3 8
655 82.10 temperature 10.0 90 > th dose independent rect. 11 16
658 82.11 precipitation 0.1 90 < th dose independent rect. 3 8
660 82.11 precipitation 0.1 90 < th dose dependent rect. 3 8
663 82.14 humidity 90.0 10 > th dose independent rect. 24 3
672 82.17 precipitation 0.1 90 < th dose independent rect. 11 16
673 82.17 wind 1.0 30 > th dose dependent rect. 2 1
674 82.17 precipitation 0.1 90 < th dose dependent rect. 11 16
683 82.20 wind 1.0 30 < th dose dependent rect. 9 18
696 82.24 radiation 40.0 30 < th dose independent rect. 3 8
703 82.25 wind 9.0 720 < th dose independent rect. 3 8
721 82.31 wind 9.0 720 < th dose independent rect. 7 8
735 82.34 wind 1.0 10 < th dose independent rect. 2 21
741 82.37 wind 7.0 720 < th dose independent rect. 3 12
742 82.37 radiation 40.0 30 < th dose independent rect. 3 23
772 82.41 temperature 10.0 1440 > th dose independent rect. 4 8
775 82.41 humidity 50.0 720 > th dose independent rect. 3 8
776 82.41 atmosphere 995.0 1440 > th dose independent rect. 4 8
778 82.41 temperature 10.0 1440 > th dose independent rect. 12 16
783 82.43 temperature 10.0 270 > th dose dependent rect. 3 19
784 82.44 atmosphere 995.0 90 > th dose independent rect. 11 16
792 82.45 wind 1.0 10 > th dose independent rect. 12 23
814 82.52 precipitation 0.1 720 < th dose independent rect. 3 8
816 82.52 precipitation 0.1 720 < th dose dependent rect. 3 8
824 82.55 wind 1.0 10 > th dose independent rect. 16 15
832 82.58 wind 7.0 270 < th dose independent rect. 3 14
858 82.64 temperature 30.0 90 < th dose independent rect. 3 8
864 82.66 wind 9.0 90 > th dose independent rect. 11 5
865 82.66 radiation 40.0 90 < th dose independent rect. 11 16
867 82.67 wind 1.0 30 < th dose dependent rect. 11 16
870 82.68 wind 1.0 10 > th dose independent rect. 14 21
880 82.69 atmosphere 995.0 30 > th dose dependent rect. 3 8
897 82.71 precipitation 0.1 720 < th dose independent rect. 23 16
899 82.71 precipitation 0.1 720 < th dose dependent rect. 23 16
912 82.74 wind 9.0 90 < th dose dependent rect. 3 8
926 82.77 humidity 50.0 90 > th dose dependent rect. 3 7
931 82.79 wind 1.0 10 < th dose independent sin 17 NA
936 82.79 humidity 50.0 90 > th dose independent rect. 11 16
967 82.83 humidity 50.0 30 > th dose dependent rect. 3 23