Os07g0540200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0540200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.44 | 0.715 | 4.8 | 2.16 | 0.77 | -3.5 | 1.16 | -5.53 | -0.487 | 6.08 | 27.68 | 142 | -- | -- |
| 271.28 | 0.767 | 4.87 | 1.28 | 0.797 | -3.24 | 0.992 | -- | -0.614 | 6.9 | 30.16 | 142 | -- | -- |
| 234.44 | 0.713 | 4.81 | 2.11 | 0.758 | -3.45 | -- | -5.14 | -0.5 | 6.15 | 27.66 | 139 | -- | -- |
| 269.89 | 0.765 | 4.9 | 1.25 | 0.805 | -3.3 | -- | -- | -0.684 | 6.08 | 29.05 | 137 | -- | -- |
| 257.19 | 0.747 | 4.81 | 2.19 | -- | -3.17 | -- | -5.12 | -0.44 | -- | 26.56 | 116 | -- | -- |
| 410.45 | 0.95 | 4.75 | 2.02 | 0.71 | -- | 1.35 | -- | -0.0138 | 12.1 | -- | -- | -- | -- |
| 418.31 | 0.958 | 4.75 | 2.07 | 0.705 | -- | -- | -- | -0.00808 | 12 | -- | -- | -- | -- |
| 293.1 | 0.801 | 4.89 | 1.43 | -- | -2.77 | -- | -- | -0.581 | -- | 28.16 | 95 | -- | -- |
| 305.92 | 0.815 | 4.95 | -- | 0.942 | -3.85 | -- | -- | -0.927 | 5.59 | 28.84 | 138 | -- | -- |
| 449.61 | 0.991 | 4.77 | 2.05 | -- | -- | -- | -- | -0.0177 | -- | -- | -- | -- | -- |
| 531.78 | 1.08 | 4.8 | -- | 0.679 | -- | -- | -- | -0.239 | 11.8 | -- | -- | -- | -- |
| 338.33 | 0.857 | 4.95 | -- | -- | -3.32 | -- | -- | -0.852 | -- | 27.62 | 92 | -- | -- |
| 560.82 | 1.11 | 4.82 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.49 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 2 | 230.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 3 | 230.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 7 | 231.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 19 | 233.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 20 | 233.20 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 25 | 233.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 27 | 233.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 10 |
| 42 | 234.04 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 170 | 237.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 213 | 238.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 231 | 238.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 238 | 238.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 274 | 238.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 279 | 238.97 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 340 | 239.69 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 424 | 240.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 448 | 240.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 530 | 241.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 882 | 243.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |