Os07g0540100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF26 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0540100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF26 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.67 | 0.445 | 12.3 | 1.19 | 1.42 | -2.53 | -0.115 | -3.9 | 0.592 | 16 | 1.357 | 4262 | -- | -- |
| 102 | 0.47 | 12.3 | 0.723 | 0.00778 | -3.08 | 1.3 | -- | 0.437 | 4.97 | 2.415 | 4936 | -- | -- |
| 89.57 | 0.441 | 12.3 | 1.18 | 1.43 | -2.52 | -- | -3.81 | 0.584 | 15.9 | 1.454 | 4250 | -- | -- |
| 97.71 | 0.46 | 12.4 | 0.488 | 0.00636 | -2.94 | -- | -- | 0.4 | 4.19 | 2.555 | 4919 | -- | -- |
| 95.14 | 0.454 | 12.4 | 0.708 | -- | -3.01 | -- | -1.56 | 0.442 | -- | 2.343 | 4916 | -- | -- |
| 176.64 | 0.623 | 12.3 | 1.02 | 1.32 | -- | -0.355 | -- | 0.856 | 16.7 | -- | -- | -- | -- |
| 176.97 | 0.623 | 12.3 | 1.02 | 1.32 | -- | -- | -- | 0.854 | 16.7 | -- | -- | -- | -- |
| 97.71 | 0.46 | 12.4 | 0.488 | -- | -2.93 | -- | -- | 0.399 | -- | 2.556 | 4919 | -- | -- |
| 103.14 | 0.473 | 12.4 | -- | 0.0914 | -3.11 | -- | -- | 0.357 | 4.08 | 2.292 | 4915 | -- | -- |
| 269.84 | 0.768 | 12.3 | 0.97 | -- | -- | -- | -- | 0.819 | -- | -- | -- | -- | -- |
| 204.42 | 0.669 | 12.3 | -- | 1.3 | -- | -- | -- | 0.74 | 16.7 | -- | -- | -- | -- |
| 103.26 | 0.473 | 12.4 | -- | -- | -3.02 | -- | -- | 0.344 | -- | 2.231 | 4916 | -- | -- |
| 294.68 | 0.801 | 12.3 | -- | -- | -- | -- | -- | 0.712 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 80.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 23 | 81.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 45 | 82.98 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 46 | 83.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 47 | 83.18 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 49 | 83.31 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 56 | 83.63 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 67 | 84.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 68 | 84.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 69 | 84.16 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 70 | 84.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 83 | 84.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 106 | 84.94 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 123 | 85.24 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 126 | 85.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 137 | 85.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 148 | 85.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 154 | 85.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 162 | 85.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 166 | 85.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 169 | 85.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 170 | 85.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 195 | 86.16 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 196 | 86.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 15 |
| 197 | 86.17 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 198 | 86.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 203 | 86.18 | temperature | 10 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 204 | 86.18 | temperature | 10 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 205 | 86.18 | temperature | 10 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 206 | 86.18 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 208 | 86.19 | temperature | 10 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 214 | 86.21 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 216 | 86.21 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 236 | 86.24 | temperature | 10 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 240 | 86.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 241 | 86.25 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 297 | 86.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 304 | 86.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 340 | 86.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 352 | 86.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 354 | 86.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 368 | 86.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 377 | 86.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 388 | 86.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 446 | 86.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 496 | 86.70 | temperature | 10 | 14400 | > th | dose dependent | sin | 11 | NA |
| 501 | 86.71 | radiation | 1 | 14400 | < th | dose dependent | sin | 14 | NA |
| 523 | 86.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 543 | 86.76 | temperature | 30 | 14400 | < th | dose dependent | sin | 11 | NA |
| 665 | 86.90 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 725 | 86.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 761 | 87.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 820 | 87.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 855 | 87.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 5 |