Os07g0539400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os07g0539400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.41 | 0.78 | 3.45 | 1.5 | 0.0703 | 114 | 0.794 | 236 | 0.102 | 8.79 | 15 | 90 | -- | -- |
| 280.41 | 0.786 | 2.86 | 0.278 | 0.0704 | 2.14 | 0.794 | -- | 0.102 | 8.79 | 15 | 90 | -- | -- |
| 282.38 | 0.783 | 3.4 | 1.43 | 0.0851 | 114 | -- | 235 | 0.103 | 6.81 | 14.9 | 89 | -- | -- |
| 282.38 | 0.788 | 2.86 | 0.307 | 0.0847 | 2.27 | -- | -- | 0.103 | 6.83 | 14.9 | 89 | -- | -- |
| 282.75 | 0.783 | 3.36 | 1.35 | -- | 113 | -- | 235 | 0.104 | -- | 14.8 | 89 | -- | -- |
| 289.04 | 0.797 | 2.87 | 0.186 | 0.0291 | -- | 0.985 | -- | 0.0805 | 9.62 | -- | -- | -- | -- |
| 292.34 | 0.801 | 2.87 | 0.22 | 0.0851 | -- | -- | -- | 0.0799 | 5.08 | -- | -- | -- | -- |
| 282.75 | 0.787 | 2.87 | 0.308 | -- | 2.26 | -- | -- | 0.104 | -- | 14.9 | 89 | -- | -- |
| 284.81 | 0.79 | 2.87 | -- | 0.0879 | 2.11 | -- | -- | 0.0676 | 6.51 | 14.61 | 69 | -- | -- |
| 292.72 | 0.799 | 2.87 | 0.223 | -- | -- | -- | -- | 0.0821 | -- | -- | -- | -- | -- |
| 293.61 | 0.802 | 2.87 | -- | 0.089 | -- | -- | -- | 0.0554 | 4.99 | -- | -- | -- | -- |
| 285.21 | 0.789 | 2.87 | -- | -- | 2.11 | -- | -- | 0.0692 | -- | 14.61 | 69 | -- | -- |
| 294.03 | 0.8 | 2.88 | -- | -- | -- | -- | -- | 0.0574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 273.84 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 2 | 273.91 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 94 | 273.91 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 196 | 275.32 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 3 |
| 210 | 275.51 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 238 | 276.21 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 243 | 276.25 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 288 | 277.24 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 289 | 277.25 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 301 | 277.40 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 312 | 277.70 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 339 | 278.05 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 341 | 278.09 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 343 | 278.14 | wind | 3.0 | 720 | > th | dose independent | rect. | 1 | 2 |
| 344 | 278.17 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 353 | 278.30 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 392 | 278.59 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 402 | 278.64 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 419 | 278.72 | wind | 3.0 | 720 | > th | dose dependent | rect. | 24 | 3 |
| 420 | 278.73 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 7 | NA |
| 434 | 278.78 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 441 | 278.80 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 10 |
| 443 | 278.81 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 448 | 278.84 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 457 | 278.87 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 461 | 278.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 475 | 278.96 | wind | 3.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 476 | 278.96 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 482 | 278.97 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 492 | 279.01 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 9 |
| 500 | 279.03 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 14 |
| 513 | 279.10 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 516 | 279.10 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 535 | 279.18 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 540 | 279.20 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 546 | 279.22 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 549 | 279.24 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 8 |
| 552 | 279.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 554 | 279.25 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 569 | 279.35 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 23 | NA |
| 584 | 279.41 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 7 | NA |
| 590 | 279.42 | atmosphere | 1000.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 612 | 279.48 | temperature | 15.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 619 | 279.49 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 625 | 279.50 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 12 |
| 656 | 279.58 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 693 | 279.65 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 14 |
| 716 | 279.70 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 723 | 279.71 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 756 | 279.80 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 771 | 279.84 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 778 | 279.84 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 781 | 279.85 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 784 | 279.86 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 785 | 279.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 790 | 279.86 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 791 | 279.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 808 | 279.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 830 | 279.93 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 834 | 279.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 848 | 279.95 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 852 | 279.95 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 858 | 279.96 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 878 | 279.98 | temperature | 15.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 889 | 279.99 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 899 | 280.00 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 918 | 280.02 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 5 |
| 996 | 280.10 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 22 | 16 |