Os07g0539300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os07g0539300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.05 | 0.726 | 9.5 | 1.37 | 1.19 | -2.77 | 1.96 | 5.8 | 1.3 | 21.5 | 20.11 | 119 | -- | -- |
| 261.99 | 0.754 | 9.62 | 0.448 | 1.22 | -3.15 | 1.49 | -- | 1.04 | 21.4 | 14.8 | 139 | -- | -- |
| 251.55 | 0.739 | 9.51 | 1.39 | 1.27 | -2.7 | -- | 5.92 | 1.28 | 21.6 | 20.29 | 167 | -- | -- |
| 268.14 | 0.763 | 9.62 | 0.332 | 1.11 | -2.93 | -- | -- | 1.01 | 22 | 15 | 82 | -- | -- |
| 304.97 | 0.813 | 9.5 | 1.05 | -- | -3.13 | -- | 3.94 | 1.27 | -- | 19.31 | 8 | -- | -- |
| 357.38 | 0.886 | 9.71 | -0.254 | 1.55 | -- | 0.515 | -- | 0.588 | 0.0607 | -- | -- | -- | -- |
| 358.47 | 0.887 | 9.71 | -0.275 | 1.55 | -- | -- | -- | 0.585 | 0.149 | -- | -- | -- | -- |
| 316.79 | 0.829 | 9.57 | 0.473 | -- | -3.53 | -- | -- | 1.11 | -- | 15.3 | 8 | -- | -- |
| 269.82 | 0.765 | 9.63 | -- | 1.05 | -2.81 | -- | -- | 0.957 | 22.2 | 15.2 | 48 | -- | -- |
| 509.52 | 1.05 | 9.68 | -0.225 | -- | -- | -- | -- | 0.608 | -- | -- | -- | -- | -- |
| 360.47 | 0.888 | 9.7 | -- | 1.55 | -- | -- | -- | 0.616 | 0.14 | -- | -- | -- | -- |
| 321.45 | 0.835 | 9.58 | -- | -- | -3.26 | -- | -- | 1.03 | -- | 16.23 | 7 | -- | -- |
| 510.86 | 1.05 | 9.67 | -- | -- | -- | -- | -- | 0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 2 | 229.29 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 4 | 229.50 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 5 | 229.67 | radiation | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 8 | 230.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 22 | 231.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 26 | 231.45 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 28 | 231.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 31 | 231.60 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 41 | 231.61 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 62 | 231.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 65 | 232.22 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 85 | 232.50 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 92 | 232.73 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 112 | 232.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 162 | 233.21 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 224 | 233.56 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 427 | 235.14 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 453 | 235.35 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 574 | 235.95 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 582 | 236.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 666 | 236.57 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 668 | 236.58 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 718 | 236.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 777 | 237.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 816 | 237.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 831 | 237.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 19 |
| 850 | 237.48 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 853 | 237.49 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 949 | 238.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |