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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0539200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0334) R2 : 0.154
β1 : -0.843 (0.122) R2dD : 0.0915 R2D : 0.103
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.324 (0.0713) R2dN8 : 0.0512 R2N8 : 0.0626
σ : 0.627
deviance : 179.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.25 0.611 3.11 -0.62 0.418 0.369 -0.0322 -0.432 0.56 15.5 24.87 30 -- --
169.97 0.607 3.12 -0.74 0.429 0.371 0.249 -- 0.529 15.3 24.9 29 -- --
169.25 0.606 3.11 -0.623 0.418 0.369 -- -0.42 0.559 15.5 24.87 29 -- --
170.02 0.607 3.12 -0.744 0.416 0.352 -- -- 0.516 15.5 24.86 27 -- --
176.43 0.622 3.13 -0.721 -- 0.188 -- -0.293 0.442 -- 24.87 29 -- --
177.85 0.625 3.16 -0.836 0.192 -- 0.0383 -- 0.328 16.3 -- -- -- --
177.85 0.625 3.16 -0.835 0.193 -- -- -- 0.329 16.3 -- -- -- --
176.81 0.619 3.14 -0.763 -- 0.198 -- -- 0.417 -- 24 32 -- --
183.94 0.632 3.1 -- 0.495 0.431 -- -- 0.63 15.5 24.74 28 -- --
179.84 0.627 3.16 -0.843 -- -- -- -- 0.324 -- -- -- -- --
196.24 0.655 3.14 -- 0.209 -- -- -- 0.422 16.3 -- -- -- --
191.73 0.645 3.14 -- -- 0.276 -- -- 0.494 -- 24 32 -- --
198.59 0.658 3.14 -- -- -- -- -- 0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.83 wind 1.0 30 < th dose dependent rect. 23 4
3 156.99 wind 1.0 30 < th dose dependent rect. 17 10
13 160.02 wind 1.0 270 < th dose dependent rect. 22 1
14 160.08 wind 1.0 30 < th dose dependent rect. 10 17
15 160.16 wind 1.0 30 < th dose dependent rect. 1 2
22 161.89 wind 1.0 30 < th dose independent rect. 1 2
35 162.17 wind 1.0 270 < th dose independent rect. 22 1
46 162.75 wind 1.0 30 < th dose independent rect. 17 10
58 162.92 temperature 25.0 10 > th dose independent rect. 14 19
78 163.83 temperature 25.0 10 > th dose independent rect. 18 15
81 163.91 wind 1.0 270 < th dose dependent rect. 17 6
87 164.19 wind 9.0 1440 < th dose independent rect. 4 6
93 164.43 temperature 25.0 10 > th dose independent rect. 20 13
95 164.48 wind 9.0 90 < th dose dependent rect. 3 13
96 164.51 temperature 15.0 90 > th dose dependent rect. 3 6
104 164.73 wind 7.0 1440 > th dose independent rect. 3 1
106 164.73 wind 7.0 1440 > th dose dependent rect. 3 1
133 165.35 wind 5.0 90 < th dose independent rect. 3 13
136 165.38 temperature 10.0 30 > th dose dependent rect. 3 22
138 165.39 temperature 25.0 10 > th dose independent rect. 24 9
154 165.86 atmosphere 1000.0 30 > th dose dependent rect. 3 6
185 166.17 temperature 25.0 10 > th dose independent sin 9 NA
186 166.18 temperature 25.0 10 > th dose independent rect. 3 6
198 166.24 atmosphere 995.0 30 > th dose dependent rect. 9 18
200 166.25 wind 1.0 10 > th dose independent rect. 13 20
220 166.46 wind 9.0 1440 < th dose independent rect. 7 3
234 166.58 temperature 25.0 30 < th dose independent rect. 18 18
276 166.77 temperature 20.0 270 > th dose dependent rect. 4 1
277 166.78 temperature 15.0 30 > th dose dependent rect. 13 20
283 166.83 temperature 20.0 270 > th dose dependent rect. 3 3
284 166.84 temperature 25.0 30 < th dose independent sin 9 NA
292 166.86 temperature 10.0 10 > th dose dependent rect. 11 23
321 167.09 temperature 30.0 90 < th dose independent rect. 9 18
328 167.13 wind 1.0 90 > th dose dependent rect. 8 5
334 167.17 atmosphere 1005.0 30 > th dose independent rect. 3 6
358 167.23 humidity 50.0 90 > th dose dependent rect. 16 11
360 167.23 temperature 10.0 30 > th dose dependent rect. 3 18
362 167.24 temperature 25.0 30 > th dose independent rect. 11 23
373 167.28 radiation 1.0 43200 < th dose dependent rect. 3 1
378 167.29 wind 1.0 10 < th dose independent sin 16 NA
393 167.34 temperature 10.0 10 > th dose dependent rect. 13 23
395 167.36 atmosphere 995.0 270 > th dose dependent rect. 9 1
403 167.40 temperature 20.0 30 > th dose dependent rect. 1 2
436 167.55 temperature 25.0 1440 < th dose independent rect. 3 4
437 167.55 wind 7.0 10 < th dose independent rect. 3 13
442 167.58 wind 1.0 270 > th dose dependent rect. 9 1
485 167.74 wind 1.0 10 < th dose dependent sin 17 NA
490 167.77 temperature 25.0 1440 > th dose independent rect. 4 3
504 167.86 atmosphere 995.0 90 > th dose dependent rect. 9 4
505 167.87 humidity 50.0 90 > th dose independent rect. 9 18
511 167.88 atmosphere 1005.0 90 > th dose dependent rect. 9 8
526 167.94 wind 1.0 10 > th dose independent rect. 24 9
535 167.97 atmosphere 1000.0 270 > th dose dependent rect. 3 2
551 168.00 temperature 10.0 270 > th dose dependent rect. 11 22
562 168.05 atmosphere 1005.0 30 > th dose independent rect. 9 18
571 168.08 wind 1.0 1440 < th dose dependent rect. 22 1
584 168.12 wind 1.0 30 > th dose independent rect. 13 23
587 168.16 wind 9.0 90 < th dose independent rect. 3 6
588 168.16 temperature 10.0 90 > th dose independent rect. 3 6
590 168.16 humidity 50.0 90 > th dose independent rect. 3 6
591 168.16 atmosphere 995.0 90 > th dose independent rect. 3 6
592 168.16 atmosphere 1015.0 90 < th dose independent rect. 3 6
593 168.16 precipitation 0.1 90 < th dose independent rect. 3 6
594 168.16 temperature 10.0 90 > th dose independent rect. 9 18
595 168.16 precipitation 0.1 90 < th dose dependent rect. 3 6
600 168.17 wind 9.0 4320 < th dose independent rect. 9 1
613 168.19 wind 5.0 90 < th dose independent rect. 3 6
651 168.30 wind 5.0 90 < th dose dependent rect. 3 18
653 168.31 wind 9.0 90 < th dose dependent rect. 16 11
654 168.32 temperature 30.0 90 < th dose independent rect. 3 6
656 168.32 wind 1.0 90 > th dose dependent rect. 5 8
659 168.34 wind 9.0 90 < th dose dependent rect. 3 6
660 168.34 humidity 50.0 90 > th dose dependent rect. 9 18
707 168.45 wind 1.0 10 > th dose independent rect. 11 23
709 168.45 temperature 25.0 1440 > th dose dependent rect. 4 3
712 168.46 wind 9.0 4320 < th dose independent rect. 1 9
725 168.48 precipitation 0.1 90 < th dose independent rect. 9 18
726 168.48 precipitation 0.1 90 < th dose dependent rect. 9 18
737 168.50 temperature 15.0 90 > th dose independent rect. 3 13
745 168.52 atmosphere 1015.0 90 < th dose independent rect. 13 20
746 168.52 wind 7.0 1440 > th dose dependent rect. 9 1
758 168.54 radiation 40.0 90 < th dose independent rect. 3 6
764 168.55 wind 7.0 1440 > th dose independent rect. 9 1
767 168.55 temperature 10.0 270 > th dose dependent rect. 11 11
770 168.56 atmosphere 1005.0 270 > th dose independent rect. 3 2
786 168.61 atmosphere 1015.0 720 < th dose independent rect. 19 20
791 168.63 atmosphere 1015.0 270 < th dose independent rect. 11 11
799 168.64 wind 1.0 10 > th dose independent rect. 13 16
808 168.66 humidity 70.0 90 > th dose independent rect. 16 11
813 168.67 temperature 30.0 90 < th dose independent rect. 16 11
817 168.67 temperature 10.0 30 > th dose dependent rect. 13 12
819 168.68 temperature 20.0 90 > th dose independent rect. 3 18
826 168.69 temperature 20.0 10 > th dose independent rect. 4 17
827 168.69 atmosphere 1015.0 720 < th dose independent rect. 17 22
829 168.69 wind 1.0 10 > th dose dependent rect. 9 5
890 168.78 wind 5.0 90 > th dose independent rect. 8 5
900 168.81 temperature 25.0 10 > th dose dependent rect. 19 14
903 168.81 radiation 1.0 270 < th dose dependent rect. 5 22
904 168.82 wind 9.0 90 < th dose independent rect. 9 18
911 168.84 atmosphere 1005.0 30 > th dose independent rect. 2 1
921 168.85 humidity 90.0 30 > th dose independent rect. 2 1
926 168.86 humidity 50.0 4320 > th dose independent rect. 4 6
932 168.87 wind 1.0 10 > th dose independent sin 16 NA
945 168.89 humidity 90.0 10 < th dose independent rect. 13 20
954 168.91 temperature 25.0 4320 < th dose independent rect. 21 12
980 168.95 temperature 20.0 30 > th dose independent rect. 2 1
981 168.95 temperature 30.0 90 < th dose independent rect. 9 4
985 168.95 humidity 80.0 30 > th dose dependent rect. 2 1
990 168.96 humidity 90.0 10 < th dose independent rect. 24 21
991 168.96 temperature 20.0 10 > th dose independent rect. 3 22