FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0539100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.33 (0.0859) R2 : 0.61
β1 : -2.71 (0.321) R2dD : 0.0979 R2D : 0.0306
β2 : 2.83 (0.178) R2dC : 0.222 R2C : 0.0379
β3 : -5.43 (0.494) R2dE : 0.251 R2E : -0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -21.8 (1.36) R2dD*E : 0.502 R2D*E : -0.0775
γ1 : -0.789 (0.16) R2dN8 : 0.031 R2N8 : -0.135
σ : 1.33
deviance : 815.59
__
_____
C
peak time of C : 2.94
E
wheather : radiation
threshold : 39.99
memory length : 4342
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14
open length of G : 18.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
809.59 1.34 7.33 -2.67 2.69 -5.39 -2.11 -21.6 -0.809 3.16 40 4332 14 18.3
1259.11 1.65 7.12 -2.47 3.41 -4.34 -2.86 -- -0.691 2.25 25.61 5913 13.9 18.6
815.59 1.33 7.33 -2.71 2.83 -5.43 -- -21.8 -0.789 2.94 39.99 4342 14 18.3
1011.55 1.48 6.77 -2.66 3.73 -3.5 -- -- -0.769 3.2 10.96 11923 14.2 17.5
1206.34 1.62 7.3 -2.8 -- -5.15 -- -21.5 -0.715 -- 39.99 4317 14 18.4
1298.06 1.69 6.53 -3.84 2.67 -- -2.6 -- -0.00512 3.36 -- -- -- --
1319.29 1.7 6.52 -3.79 2.66 -- -- -- 0.0097 3.45 -- -- -- --
1362.33 1.72 6.72 -2.93 -- -2.9 -- -- -0.793 -- 10.04 12822 14.4 18.1
1232.47 1.64 6.78 -- 2.35 -4.02 -- -- -0.979 3.08 11.64 11563 14.6 16.7
1717.17 1.94 6.52 -3.68 -- -- -- -- 0.0803 -- -- -- -- --
1698.01 1.93 6.43 -- 2.59 -- -- -- 0.432 3.45 -- -- -- --
1302.11 1.68 6.7 -- -- -4.99 -- -- -0.0323 -- 3.7 12902 16.7 12.9
2074.06 2.13 6.43 -- -- -- -- -- 0.488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 789.46 humidity 90 14400 > th dose dependent rect. 6 1
3 791.23 humidity 70 14400 > th dose dependent rect. 18 13
20 798.36 humidity 70 14400 > th dose dependent sin 12 NA
21 798.51 humidity 70 14400 > th dose dependent rect. 18 10
34 801.02 humidity 70 14400 > th dose dependent rect. 20 6
56 803.69 humidity 80 14400 > th dose dependent rect. 5 3
80 806.71 humidity 70 14400 > th dose dependent rect. 21 3
100 808.46 humidity 50 14400 > th dose dependent rect. 22 1
136 811.38 wind 1 43200 > th dose dependent rect. 7 2
153 812.69 wind 9 43200 < th dose dependent rect. 7 2
159 813.00 humidity 90 14400 < th dose independent rect. 6 1
220 818.06 wind 3 43200 < th dose dependent rect. 4 1
230 819.07 wind 3 43200 < th dose dependent rect. 3 3
231 819.10 wind 9 43200 < th dose dependent rect. 3 6
249 820.49 wind 1 43200 > th dose dependent rect. 3 6
348 826.04 humidity 80 14400 > th dose dependent rect. 1 9
384 828.12 humidity 90 14400 > th dose independent rect. 6 1
485 832.70 humidity 80 14400 > th dose dependent no NA NA
492 833.05 radiation 40 14400 < th dose dependent rect. 18 2
517 834.24 humidity 80 14400 > th dose independent rect. 18 2
542 835.24 humidity 80 14400 > th dose dependent rect. 5 23
578 836.58 humidity 80 14400 > th dose independent rect. 15 8
584 836.74 humidity 80 14400 > th dose dependent rect. 1 23
596 837.18 radiation 20 14400 < th dose dependent rect. 18 11
598 837.22 wind 5 43200 < th dose independent rect. 6 2
674 839.61 radiation 40 4320 < th dose independent rect. 14 18
676 839.75 wind 5 43200 > th dose independent rect. 6 2
680 839.90 humidity 80 14400 > th dose independent rect. 17 4
703 840.52 radiation 30 14400 < th dose dependent rect. 18 8
731 841.43 humidity 80 14400 < th dose independent rect. 15 9
733 841.48 humidity 90 14400 < th dose dependent rect. 21 2
750 842.01 wind 1 43200 > th dose dependent rect. 4 1
894 846.54 humidity 80 14400 < th dose independent rect. 18 1
900 846.67 humidity 80 14400 < th dose independent rect. 17 4
909 847.04 radiation 10 14400 < th dose independent rect. 17 4
914 847.13 radiation 10 14400 < th dose independent rect. 17 6
917 847.19 radiation 10 14400 < th dose independent rect. 17 1
921 847.26 radiation 10 14400 < th dose independent rect. 17 12
927 847.33 humidity 90 14400 < th dose dependent rect. 20 4
931 847.49 wind 3 43200 > th dose independent rect. 3 6
934 847.54 radiation 10 14400 < th dose independent rect. 17 9
963 848.25 wind 3 43200 > th dose independent rect. 3 2
967 848.31 wind 3 43200 < th dose independent rect. 3 2
970 848.40 wind 3 43200 < th dose independent rect. 3 6