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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0538400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0607) R2 : 0.391
β1 : 1.61 (0.2) R2dD : 0.13 R2D : -0.11
β2 : 1.39 (0.111) R2dC : 0.21 R2C : 0.172
β3 : 16.2 (1.8) R2dE : 3.14 R2E : -2.34
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 34.9 (4.58) R2dD*E : 2.22 R2D*E : -2.73
γ1 : 0.22 (0.0986) R2dN8 : 0.00921 R2N8 : -0.0819
σ : 0.851
deviance : 333.56
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_____
C
peak time of C : 2.25
E
wheather : radiation
threshold : 1.095
memory length : 1130
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.15
open length of G : 4.41

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.59 0.858 4.55 1.63 1.39 16.3 0.069 35 0.221 2.25 1.119 1131 9.13 4.47
381.22 0.909 4.24 1.19 1.16 3.25 1.98 -- 0.32 0.475 0.7905 971 12 5.33
333.56 0.851 4.55 1.61 1.39 16.2 -- 34.9 0.22 2.25 1.095 1130 9.15 4.41
359.86 0.884 4.28 1.09 1.31 2.93 -- -- 0.232 2.42 0.9505 949 13 4.08
447.44 0.985 4.54 1.7 -- 16.3 -- 34.9 0.264 -- 0.9399 1117 9.35 4.25
417.9 0.958 4.28 0.45 1.43 -- -0.177 -- 0.0988 2.08 -- -- -- --
418.02 0.957 4.28 0.456 1.43 -- -- -- 0.0999 2.07 -- -- -- --
389.28 0.919 4.23 0.552 -- 2.19 -- -- 0.2 -- 6.539 846 13.9 6.6
379.71 0.908 4.29 -- 1.36 2.36 -- -- 0.106 2.22 2.062 975 12.8 3.67
540.27 1.09 4.26 0.515 -- -- -- -- 0.134 -- -- -- -- --
423.49 0.963 4.29 -- 1.44 -- -- -- 0.0491 2.08 -- -- -- --
395.31 0.926 4.27 -- -- 2.12 -- -- 0.0882 -- 8.471 845 14 6.57
547.28 1.09 4.27 -- -- -- -- -- 0.0765 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.90 radiation 1 1440 > th dose independent rect. 9 4
3 348.52 radiation 1 1440 < th dose independent rect. 9 4
4 348.52 radiation 1 1440 < th dose dependent rect. 9 4
8 348.75 radiation 1 1440 > th dose independent rect. 11 3
11 348.92 radiation 1 1440 < th dose independent rect. 13 1
12 348.92 radiation 1 1440 < th dose dependent rect. 13 1
13 348.95 radiation 1 1440 < th dose independent rect. 11 3
14 348.95 radiation 1 1440 < th dose dependent rect. 11 3
68 355.07 humidity 50 720 > th dose dependent rect. 16 7
69 355.10 radiation 1 1440 > th dose independent rect. 9 1
70 355.17 humidity 90 720 > th dose dependent rect. 20 1
83 357.80 humidity 90 720 > th dose dependent rect. 18 6
91 358.58 humidity 90 720 < th dose dependent rect. 15 9
92 358.87 humidity 80 720 < th dose dependent sin 12 NA
97 359.45 humidity 80 720 < th dose dependent rect. 15 17
103 359.66 humidity 80 720 < th dose dependent rect. 15 14
112 360.14 humidity 50 720 > th dose dependent sin 15 NA
149 361.10 humidity 70 720 > th dose dependent rect. 19 2
174 361.73 humidity 50 720 > th dose dependent rect. 15 15
289 365.07 humidity 70 720 < th dose independent rect. 17 2
293 365.17 humidity 70 720 < th dose independent rect. 17 15
308 365.64 atmosphere 1005 720 > th dose independent rect. 19 6
363 366.71 humidity 80 720 > th dose independent rect. 15 7
378 367.02 humidity 80 720 > th dose independent rect. 11 11
404 367.65 atmosphere 1005 270 < th dose independent rect. 21 7
417 367.86 humidity 70 720 < th dose independent sin 13 NA
432 368.04 humidity 70 720 > th dose independent rect. 16 15
448 368.30 humidity 90 720 > th dose independent rect. 20 4
485 368.85 humidity 70 720 > th dose independent sin 13 NA
528 369.26 humidity 70 720 > th dose independent rect. 17 9
603 370.10 atmosphere 1005 270 > th dose independent rect. 18 14
711 371.40 atmosphere 1005 720 < th dose independent rect. 19 6
714 371.43 humidity 80 720 > th dose independent sin 18 NA
751 371.78 radiation 10 1440 < th dose dependent rect. 11 13
752 371.78 radiation 10 1440 < th dose dependent rect. 11 17
775 371.90 atmosphere 1005 270 > th dose independent sin 11 NA
790 372.05 atmosphere 1005 270 < th dose independent rect. 23 2
847 372.37 humidity 80 720 > th dose independent rect. 11 15
887 372.70 humidity 80 720 < th dose independent rect. 12 10
888 372.71 humidity 80 1440 > th dose independent rect. 11 3
950 372.99 humidity 80 720 > th dose independent rect. 11 19
954 373.00 humidity 80 720 > th dose independent rect. 11 21