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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0538300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0481) R2 : 0.484
β1 : 1.44 (0.21) R2dD : 0.0959 R2D : 0.12
β2 : 1.21 (0.104) R2dC : 0.155 R2C : 0.148
β3 : 4.79 (0.368) R2dE : 0.521 R2E : -0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.96 (1.23) R2dD*E : 0.236 R2D*E : -0.135
γ1 : 0.17 (0.0995) R2dN8 : 0.00497 R2N8 : -0.0303
σ : 0.813
deviance : 304.91
__
_____
C
peak time of C : 23.1
E
wheather : radiation
threshold : 0.68
memory length : 1440
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.83 0.82 4.64 1.47 1.21 4.69 0.175 8.61 0.175 23.1 0.7377 1441 -- --
324.66 0.839 4.52 2.12 1.61 2.84 0.0357 -- 0.297 23.1 2.471 1385 -- --
304.91 0.813 4.65 1.44 1.21 4.79 -- 8.96 0.17 23.1 0.68 1440 -- --
322.52 0.836 4.5 2.15 1.12 2.88 -- -- 0.336 22.9 2.487 1445 -- --
339.36 0.858 4.56 1.64 -- 5.29 -- 8.71 0.264 -- 0.7486 1508 -- --
426.08 0.968 4.59 1.63 1.19 -- -0.117 -- -0.0715 22.9 -- -- -- --
426.14 0.967 4.59 1.63 1.19 -- -- -- -0.0711 22.9 -- -- -- --
348.37 0.869 4.46 2.23 -- 3.58 -- -- 0.39 -- 2.41 1559 -- --
440.7 0.978 4.55 -- 0.99 2.22 -- -- 0.0829 22.6 3.308 1492 -- --
514.14 1.06 4.56 1.66 -- -- -- -- -0.0628 -- -- -- -- --
496.25 1.04 4.63 -- 1.2 -- -- -- -0.253 23 -- -- -- --
467.92 1.01 4.53 -- -- 2.83 -- -- 0.0781 -- 3.246 1578 -- --
586.54 1.13 4.6 -- -- -- -- -- -0.247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.77 radiation 1 1440 < th dose dependent rect. 11 19
5 302.64 radiation 1 1440 < th dose dependent sin 23 NA
17 305.35 radiation 1 1440 < th dose dependent rect. 5 22
18 305.43 radiation 1 1440 < th dose dependent rect. 5 14
19 305.44 radiation 1 1440 < th dose dependent rect. 5 20
22 305.48 radiation 1 1440 < th dose dependent rect. 5 17
27 305.58 radiation 1 1440 < th dose dependent rect. 11 16
31 305.71 radiation 1 1440 < th dose dependent rect. 11 14
35 305.79 radiation 1 1440 < th dose dependent rect. 11 8
39 305.88 radiation 1 1440 < th dose dependent rect. 11 11
40 305.88 radiation 1 1440 < th dose dependent rect. 24 19
55 305.98 radiation 1 1440 < th dose dependent rect. 2 23
57 305.99 radiation 1 1440 < th dose dependent rect. 2 17
63 306.03 radiation 1 1440 < th dose dependent no NA NA
67 306.03 radiation 1 1440 < th dose dependent rect. 2 20
142 307.17 radiation 1 1440 > th dose independent rect. 11 19
148 307.40 radiation 1 1440 < th dose dependent sin 16 NA
153 307.46 radiation 1 1440 < th dose independent rect. 11 19
181 308.59 radiation 1 1440 < th dose dependent rect. 15 23
228 310.51 radiation 1 1440 > th dose independent rect. 7 23
235 310.92 radiation 1 1440 < th dose independent rect. 7 23
240 311.29 humidity 90 43200 > th dose independent rect. 21 1
254 312.75 humidity 70 14400 < th dose independent rect. 18 13
255 312.79 humidity 70 14400 > th dose independent rect. 18 13
257 313.13 radiation 1 1440 > th dose independent sin 23 NA
261 313.28 humidity 70 14400 > th dose independent rect. 18 5
263 313.30 humidity 70 14400 > th dose independent rect. 18 9
271 313.45 humidity 70 14400 < th dose independent rect. 18 4
280 313.49 humidity 70 14400 < th dose independent rect. 18 2
284 313.64 radiation 1 1440 > th dose independent sin 15 NA
285 313.68 radiation 1 1440 < th dose independent sin 23 NA
305 314.27 radiation 1 1440 < th dose independent sin 14 NA
310 314.52 radiation 1 1440 < th dose independent rect. 5 22
311 314.58 radiation 1 1440 < th dose independent rect. 5 14
313 314.60 radiation 1 1440 < th dose independent rect. 5 20
321 314.69 radiation 20 14400 > th dose dependent rect. 16 15
325 314.82 radiation 1 1440 > th dose independent rect. 5 14
341 314.96 humidity 90 43200 > th dose dependent rect. 20 2
342 314.98 radiation 1 1440 < th dose independent rect. 24 19
351 315.06 radiation 1 1440 < th dose independent rect. 2 17
354 315.07 radiation 1 1440 < th dose independent rect. 2 23
356 315.08 temperature 25 14400 > th dose independent rect. 19 1
361 315.10 radiation 1 1440 > th dose independent rect. 11 8
376 315.11 radiation 1 1440 < th dose independent no NA NA
390 315.16 temperature 25 14400 < th dose independent rect. 19 1
402 315.23 temperature 25 14400 > th dose independent rect. 17 4
408 315.28 temperature 25 14400 < th dose independent rect. 17 4
409 315.29 radiation 1 1440 > th dose independent no NA NA
464 315.52 humidity 90 43200 < th dose independent rect. 21 1
492 315.84 radiation 20 14400 > th dose dependent rect. 16 1
542 316.49 radiation 1 1440 < th dose independent rect. 11 16
545 316.62 radiation 1 1440 < th dose independent rect. 11 8
546 316.62 radiation 1 1440 < th dose independent rect. 11 14
572 317.09 radiation 1 1440 < th dose independent rect. 16 23
602 317.35 radiation 1 1440 > th dose independent rect. 16 23
603 317.36 humidity 90 43200 < th dose independent rect. 17 10
632 317.81 radiation 1 1440 > th dose independent rect. 7 12
649 317.96 temperature 25 14400 > th dose dependent rect. 11 1
656 318.07 temperature 25 14400 > th dose dependent rect. 15 1
666 318.21 humidity 80 43200 > th dose independent rect. 12 2
667 318.21 humidity 90 43200 < th dose independent rect. 20 5
688 318.58 humidity 90 43200 > th dose independent rect. 17 10
695 318.66 temperature 25 14400 > th dose dependent rect. 11 7
708 318.75 temperature 25 14400 > th dose dependent rect. 11 5
723 318.83 temperature 25 14400 > th dose dependent rect. 15 3
724 318.84 wind 5 43200 < th dose independent rect. 11 1
735 318.90 temperature 25 14400 < th dose independent rect. 17 8
768 318.99 humidity 90 43200 < th dose independent sin 14 NA
784 319.08 humidity 90 43200 > th dose independent rect. 18 7
827 319.26 temperature 25 14400 > th dose dependent rect. 11 17
844 319.31 temperature 25 14400 > th dose dependent sin 21 NA
851 319.33 temperature 25 14400 > th dose dependent rect. 1 17
853 319.34 radiation 1 1440 < th dose independent rect. 7 20
893 319.44 humidity 80 43200 < th dose independent rect. 13 2
896 319.45 radiation 1 1440 < th dose independent rect. 7 18
902 319.47 radiation 1 1440 < th dose independent rect. 7 12
904 319.48 temperature 25 14400 > th dose independent rect. 17 19
932 319.55 temperature 25 14400 < th dose independent rect. 7 1
971 319.62 temperature 25 14400 > th dose dependent rect. 17 1