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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0537900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SRK3 gene.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0527) R2 : 0.0105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.244 (0.111) R2dN8 : 0.0135 R2N8 : 0.0105
σ : 0.993
deviance : 452.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
408.18 0.949 3.99 0.278 0.383 9.48 0.429 -25.5 0.358 21.7 0.09985 245 -- --
417.35 0.951 3.93 0.516 0.198 2.89 -0.0148 -- 0.253 2.24 1.222 173 -- --
407.38 0.94 3.98 0.265 0.369 9.51 -- -24.9 0.363 22.5 0.06275 170 -- --
411.69 0.945 3.92 0.502 0.352 3.05 -- -- 0.32 22.2 1.14 172 -- --
415.53 0.949 3.97 0.24 -- 9.95 -- -25.6 0.352 -- 0.1809 170 -- --
430.15 0.972 3.92 0.63 0.415 -- 0.935 -- 0.313 21.1 -- -- -- --
432.84 0.974 3.92 0.594 0.412 -- -- -- 0.31 21.8 -- -- -- --
419.01 0.953 3.9 0.511 -- 3.16 -- -- 0.322 -- 1.073 172 -- --
418.01 0.952 3.91 -- 0.35 2.88 -- -- 0.302 22.4 0.9181 172 -- --
442.96 0.983 3.91 0.598 -- -- -- -- 0.31 -- -- -- -- --
442.14 0.984 3.93 -- 0.414 -- -- -- 0.244 21.9 -- -- -- --
425.31 0.961 3.92 -- -- 3.04 -- -- 0.278 -- 0.922 172 -- --
452.4 0.993 3.92 -- -- -- -- -- 0.244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.46 atmosphere 1005 90 < th dose dependent rect. 12 1
2 399.70 atmosphere 1000 10 < th dose independent rect. 12 2
6 399.87 wind 7 14400 < th dose independent rect. 15 3
8 400.05 wind 7 14400 > th dose independent rect. 15 3
10 400.14 wind 7 14400 > th dose dependent rect. 14 7
11 400.15 atmosphere 1005 10 < th dose dependent rect. 12 2
13 400.22 radiation 40 10 > th dose independent rect. 14 1
51 400.24 wind 7 14400 > th dose dependent rect. 15 3
86 401.30 wind 7 14400 < th dose independent rect. 12 9
91 401.43 wind 7 14400 > th dose independent rect. 12 9
96 401.61 wind 3 14400 > th dose dependent rect. 15 16
109 401.80 wind 7 14400 > th dose dependent rect. 14 16
119 401.95 wind 7 14400 < th dose independent rect. 12 18
135 402.10 wind 7 14400 > th dose independent rect. 12 18
145 402.20 wind 7 14400 > th dose dependent sin 16 NA
155 402.29 humidity 70 43200 < th dose independent rect. 1 11
175 402.41 wind 7 14400 < th dose independent sin 17 NA
187 402.46 wind 7 14400 > th dose independent sin 17 NA
259 402.76 humidity 60 43200 > th dose independent rect. 11 2
284 402.87 humidity 70 43200 < th dose dependent rect. 12 1
309 402.95 temperature 30 43200 > th dose dependent rect. 8 1
335 403.01 humidity 70 43200 > th dose independent rect. 20 16
345 403.05 humidity 70 43200 > th dose independent rect. 24 12
378 403.18 wind 7 14400 > th dose independent rect. 3 18
379 403.19 humidity 60 43200 > th dose independent rect. 10 4
382 403.20 humidity 70 43200 < th dose dependent rect. 10 4
411 403.30 temperature 30 43200 > th dose independent rect. 8 1
431 403.31 wind 7 14400 < th dose independent rect. 3 18
457 403.43 humidity 70 43200 < th dose independent sin 7 NA
470 403.50 radiation 30 43200 < th dose independent rect. 7 4
474 403.51 temperature 30 43200 < th dose independent rect. 7 2
481 403.53 radiation 30 43200 < th dose independent rect. 1 10
504 403.56 temperature 30 43200 < th dose independent rect. 5 4
528 403.64 wind 3 14400 > th dose dependent sin 13 NA
536 403.67 temperature 30 43200 < th dose independent rect. 22 11
550 403.69 temperature 30 43200 < th dose independent rect. 24 9
553 403.69 radiation 10 43200 < th dose dependent rect. 17 15
625 403.84 radiation 30 43200 < th dose independent sin 10 NA
631 403.85 radiation 30 43200 > th dose independent rect. 16 17
638 403.87 radiation 30 43200 > th dose independent rect. 7 2
661 403.88 radiation 40 43200 < th dose dependent rect. 17 15
663 403.89 wind 7 14400 > th dose dependent rect. 3 18
691 403.95 humidity 60 43200 < th dose independent rect. 11 3
727 404.03 radiation 1 43200 > th dose dependent rect. 17 14
730 404.04 radiation 30 43200 > th dose independent rect. 16 19
764 404.08 radiation 30 43200 > th dose dependent rect. 7 3
870 404.24 humidity 80 43200 < th dose dependent rect. 1 12
899 404.27 radiation 30 43200 > th dose independent sin 10 NA
943 404.35 radiation 10 43200 < th dose independent rect. 15 23
950 404.36 radiation 10 43200 < th dose independent rect. 17 23
960 404.37 radiation 10 43200 < th dose independent rect. 11 22
963 404.38 wind 7 14400 > th dose independent no NA NA