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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0537600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0753) R2 : 0.41
β1 : -0.48 (0.276) R2dD : 0.0044 R2D : 0.00942
β2 : 1.81 (0.183) R2dC : 0.125 R2C : 0.165
β3 : 2.81 (0.241) R2dE : 0.196 R2E : 0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.77 (0.844) R2dD*E : 0.0299 R2D*E : 0.049
γ1 : 0.278 (0.166) R2dN8 : 0.00571 R2N8 : -0.00958
σ : 1.39
deviance : 888.18
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_____
C
peak time of C : 2.23
E
wheather : radiation
threshold : 16.15
memory length : 1154
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.6
open length of G : 1.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
874.28 1.39 3.85 -0.579 1.77 2.82 -2.18 -3.59 0.31 2.41 16.76 1148 11.6 1.71
907.12 1.4 3.86 -0.647 1.8 2.91 -2.7 -- 0.26 2.3 16.32 1154 11.6 1.7
888.18 1.39 3.86 -0.48 1.81 2.81 -- -3.77 0.278 2.23 16.15 1154 11.6 1.72
932.11 1.42 3.86 -0.565 1.8 2.91 -- -- 0.26 2.17 16.15 1156 11.6 1.7
1073 1.53 3.86 -0.435 -- 3.17 -- -3.7 0.299 -- 16.47 1158 11.6 1.71
1177.78 1.61 4.02 -1.11 2.1 -- -2.69 -- -0.347 1.51 -- -- -- --
1206.75 1.63 4.02 -1.02 2.1 -- -- -- -0.331 1.39 -- -- -- --
1109.64 1.55 3.86 -0.533 -- 3.3 -- -- 0.361 -- 18.4 1162 11.6 1.7
942.13 1.43 3.85 -- 1.76 2.98 -- -- 0.321 2.19 16.15 1156 11.6 1.7
1478.47 1.8 3.99 -0.937 -- -- -- -- -0.287 -- -- -- -- --
1234.14 1.64 3.99 -- 2.08 -- -- -- -0.217 1.37 -- -- -- --
1119.66 1.56 3.85 -- -- 3.32 -- -- 0.384 -- 18.35 1157 11.6 1.72
1501.61 1.81 3.96 -- -- -- -- -- -0.183 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 955.93 radiation 20 1440 < th dose independent rect. 11 2
2 957.55 radiation 20 1440 < th dose independent rect. 11 22
3 957.61 radiation 20 1440 < th dose dependent rect. 11 22
4 957.92 radiation 20 1440 < th dose independent rect. 11 5
5 958.03 temperature 20 90 > th dose independent rect. 21 9
7 958.28 humidity 50 720 > th dose dependent rect. 16 6
10 958.91 radiation 20 1440 < th dose dependent sin 21 NA
12 959.50 radiation 20 1440 < th dose dependent rect. 8 16
13 959.55 radiation 20 1440 < th dose dependent rect. 8 10
20 959.78 radiation 20 1440 < th dose dependent rect. 8 20
22 959.83 wind 7 4320 > th dose independent rect. 17 2
23 959.83 radiation 20 1440 < th dose independent rect. 11 13
24 959.87 radiation 20 1440 < th dose independent rect. 11 19
32 960.00 radiation 20 1440 < th dose independent rect. 11 10
35 960.11 radiation 20 1440 < th dose independent rect. 11 16
43 961.04 radiation 10 1440 < th dose independent rect. 13 4
44 961.08 radiation 20 1440 > th dose independent rect. 11 22
58 961.82 radiation 10 720 < th dose independent rect. 14 13
64 962.19 radiation 20 1440 < th dose dependent rect. 11 7
71 962.52 radiation 20 1440 < th dose dependent rect. 11 13
85 962.85 radiation 20 1440 < th dose dependent rect. 11 16
96 963.35 radiation 20 1440 < th dose dependent rect. 11 2
98 963.61 humidity 60 720 > th dose dependent rect. 17 4
102 963.71 wind 7 4320 < th dose independent rect. 17 3
106 963.99 temperature 20 30 > th dose independent rect. 21 7
116 964.47 radiation 10 1440 < th dose independent rect. 13 11
185 965.87 radiation 10 720 < th dose independent rect. 16 1
223 966.47 radiation 1 1440 > th dose dependent rect. 11 22
262 967.45 radiation 20 1440 < th dose dependent rect. 2 22
263 967.49 radiation 20 1440 < th dose dependent rect. 2 16
299 967.72 radiation 20 1440 < th dose dependent rect. 22 20
321 967.85 radiation 20 1440 < th dose dependent no NA NA
368 968.53 wind 7 4320 > th dose dependent rect. 17 2
369 968.55 radiation 10 1440 > th dose independent rect. 16 23
383 969.42 radiation 20 1440 < th dose dependent rect. 16 23
387 969.55 humidity 90 720 > th dose dependent rect. 20 1
422 969.79 humidity 70 720 > th dose independent rect. 16 12
535 971.33 radiation 1 1440 > th dose dependent rect. 11 7
539 971.45 radiation 1 1440 > th dose dependent rect. 11 5
670 973.08 radiation 10 1440 < th dose independent sin 18 NA
697 973.48 radiation 20 1440 < th dose independent sin 20 NA
731 973.71 radiation 30 1440 < th dose dependent rect. 14 23
815 974.43 radiation 1 1440 > th dose dependent sin 20 NA
816 974.44 radiation 1 1440 > th dose dependent rect. 11 2
822 974.53 radiation 10 1440 < th dose independent rect. 13 2
833 974.66 radiation 10 1440 > th dose independent rect. 8 23
923 975.69 temperature 20 90 > th dose independent sin 11 NA
952 976.05 radiation 20 1440 > th dose independent no NA NA
953 976.05 radiation 20 1440 > th dose independent rect. 6 11