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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0537400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.37 (0.0293) R2 : 0.607
β1 : 2.22 (0.107) R2dD : 0.381 R2D : 0.215
β2 : 0.771 (0.072) R2dC : 0.099 R2C : 0.0504
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.987 (0.0626) R2dN8 : 0.287 R2N8 : 0.118
σ : 0.551
deviance : 138.61
__
_____
C
peak time of C : 2.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.07 0.515 5.34 2.41 0.131 -0.976 -0.547 0.501 1.09 12.5 10.09 268 -- --
120.16 0.511 5.34 2.42 0.149 -0.919 -0.31 -- 1.1 10.6 10.55 226 -- --
120.7 0.512 5.34 2.44 0.164 -0.995 -- 0.19 1.12 13.2 10.1 264 -- --
120.13 0.51 5.35 2.38 0.149 -0.931 -- -- 1.08 11.1 10.23 229 -- --
121.03 0.512 5.35 2.34 -- -0.874 -- 0.0357 1.06 -- 10.23 260 -- --
138.19 0.551 5.37 2.22 0.769 -- 0.343 -- 0.989 2.5 -- -- -- --
138.61 0.551 5.37 2.22 0.771 -- -- -- 0.987 2.54 -- -- -- --
121.01 0.512 5.35 2.36 -- -0.874 -- -- 1.07 -- 10.22 259 -- --
252.73 0.74 5.36 -- 0.0759 -0.875 -- -- 0.936 10.6 9.637 286 -- --
173.49 0.615 5.36 2.25 -- -- -- -- 1.01 -- -- -- -- --
267.99 0.766 5.43 -- 0.814 -- -- -- 0.74 2.58 -- -- -- --
250.6 0.737 5.42 -- -- -0.858 -- -- 0.763 -- 9.264 286 -- --
306.83 0.818 5.42 -- -- -- -- -- 0.756 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.14 temperature 10.0 90 > th dose dependent rect. 9 20
3 115.06 temperature 30.0 90 < th dose dependent rect. 13 10
4 115.32 radiation 1.0 270 > th dose independent rect. 7 12
20 115.76 temperature 30.0 10 < th dose dependent rect. 6 16
21 115.90 radiation 20.0 270 < th dose dependent rect. 11 21
23 115.93 humidity 70.0 90 > th dose dependent rect. 5 16
25 115.99 temperature 30.0 90 < th dose dependent rect. 5 17
34 116.34 temperature 25.0 90 < th dose independent rect. 13 10
48 116.73 temperature 30.0 10 < th dose dependent rect. 14 8
49 116.76 temperature 30.0 10 < th dose dependent rect. 12 10
52 116.81 humidity 70.0 10 > th dose dependent rect. 6 16
54 116.85 temperature 25.0 10 < th dose independent rect. 14 8
62 116.94 radiation 20.0 270 < th dose independent rect. 11 21
69 116.99 radiation 1.0 270 < th dose dependent rect. 9 9
101 117.29 radiation 10.0 270 < th dose dependent rect. 4 14
145 117.68 humidity 70.0 90 > th dose independent rect. 5 16
155 117.78 temperature 25.0 90 < th dose independent rect. 5 18
187 118.26 humidity 70.0 270 > th dose independent rect. 11 21
190 118.30 temperature 30.0 270 < th dose dependent rect. 17 1
209 118.45 radiation 10.0 270 < th dose dependent sin 0 NA
221 118.54 humidity 70.0 270 > th dose independent rect. 13 19
243 118.79 radiation 20.0 270 < th dose dependent rect. 2 23
258 118.86 temperature 25.0 10 > th dose independent rect. 10 14
281 119.08 temperature 25.0 30 > th dose independent sin 19 NA
293 119.20 radiation 1.0 270 < th dose independent sin 0 NA
297 119.23 humidity 70.0 10 > th dose dependent sin 20 NA
300 119.24 temperature 25.0 30 < th dose independent sin 19 NA
306 119.27 temperature 30.0 10 < th dose dependent sin 19 NA
308 119.28 radiation 10.0 270 > th dose independent sin 0 NA
347 119.40 temperature 30.0 10 < th dose dependent rect. 17 5
389 119.65 temperature 25.0 10 > th dose independent rect. 10 10
394 119.67 temperature 25.0 10 > th dose independent rect. 10 18
400 119.70 radiation 1.0 270 < th dose independent rect. 10 8
447 119.96 humidity 70.0 270 > th dose independent rect. 3 17
464 120.03 radiation 20.0 270 < th dose dependent rect. 2 21
492 120.09 radiation 1.0 270 < th dose dependent rect. 17 1
497 120.11 radiation 10.0 270 > th dose independent no NA NA
498 120.11 radiation 1.0 270 < th dose independent rect. 17 1
598 120.16 radiation 1.0 270 < th dose independent rect. 4 14
606 120.17 temperature 20.0 10 > th dose dependent rect. 10 16
612 120.19 temperature 20.0 10 > th dose dependent rect. 10 14
664 120.36 temperature 25.0 270 < th dose independent rect. 17 1
720 120.58 radiation 10.0 270 > th dose independent rect. 15 23
833 120.99 humidity 70.0 90 > th dose independent rect. 5 13
865 121.10 humidity 90.0 90 < th dose independent rect. 9 10
889 121.16 humidity 70.0 90 > th dose independent rect. 4 23
894 121.19 radiation 20.0 270 < th dose independent rect. 11 10
917 121.28 precipitation 0.1 90 < th dose independent rect. 9 20
919 121.28 temperature 25.0 10 < th dose dependent rect. 10 12
920 121.28 precipitation 0.1 90 < th dose dependent rect. 9 20
922 121.29 precipitation 0.1 270 > th dose independent rect. 14 4
928 121.30 humidity 70.0 90 > th dose dependent rect. 5 20
963 121.40 humidity 70.0 90 > th dose dependent rect. 12 9
978 121.44 temperature 10.0 90 > th dose dependent rect. 9 10
992 121.46 radiation 20.0 270 < th dose dependent no NA NA