Os07g0537300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine kinase receptor-like protein.
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Os07g0537300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine kinase receptor-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.48 | 0.629 | 5.77 | 2.6 | 0.524 | 1.36 | -1.11 | -0.814 | 1.21 | 12.2 | 16.21 | 261 | -- | -- |
| 180.05 | 0.625 | 5.77 | 2.57 | 0.453 | 1.27 | -0.433 | -- | 1.19 | 11.6 | 16.79 | 258 | -- | -- |
| 180.71 | 0.626 | 5.77 | 2.54 | 0.444 | 1.26 | -- | 0.155 | 1.19 | 11.6 | 16.68 | 258 | -- | -- |
| 180.82 | 0.626 | 5.77 | 2.55 | 0.454 | 1.27 | -- | -- | 1.19 | 11.6 | 16.74 | 258 | -- | -- |
| 184.43 | 0.633 | 5.78 | 2.53 | -- | 1.05 | -- | 0.204 | 1.2 | -- | 21.84 | 310 | -- | -- |
| 197.92 | 0.66 | 5.79 | 2.48 | 0.948 | -- | 0.542 | -- | 1.12 | 3.23 | -- | -- | -- | -- |
| 198.86 | 0.66 | 5.8 | 2.47 | 0.951 | -- | -- | -- | 1.11 | 3.28 | -- | -- | -- | -- |
| 184.58 | 0.633 | 5.78 | 2.53 | -- | 1.06 | -- | -- | 1.2 | -- | 21.98 | 310 | -- | -- |
| 346.04 | 0.866 | 5.85 | -- | 0.538 | 1.29 | -- | -- | 0.884 | 11.8 | 10 | 288 | -- | -- |
| 250.06 | 0.739 | 5.8 | 2.51 | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
| 359.6 | 0.887 | 5.86 | -- | 1 | -- | -- | -- | 0.84 | 3.28 | -- | -- | -- | -- |
| 348.34 | 0.869 | 5.84 | -- | -- | 1.17 | -- | -- | 0.933 | -- | 10.08 | 427 | -- | -- |
| 416.24 | 0.952 | 5.86 | -- | -- | -- | -- | -- | 0.861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 11 |
| 2 | 168.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 22 |
| 25 | 170.45 | humidity | 80.0 | 30 | > th | dose independent | rect. | 6 | 16 |
| 27 | 170.75 | radiation | 1.0 | 270 | > th | dose independent | sin | 23 | NA |
| 28 | 170.75 | humidity | 80.0 | 90 | < th | dose independent | rect. | 9 | 10 |
| 31 | 170.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 33 | 171.08 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 35 | 171.27 | radiation | 1.0 | 270 | < th | dose independent | sin | 23 | NA |
| 42 | 171.98 | radiation | 1.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 43 | 172.20 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 60 | 173.24 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 61 | 173.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 63 | 173.50 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 10 |
| 64 | 173.50 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 65 | 173.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 85 | 174.15 | humidity | 80.0 | 30 | > th | dose independent | sin | 21 | NA |
| 95 | 174.36 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 11 |
| 129 | 175.39 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 134 | 175.49 | humidity | 80.0 | 30 | < th | dose independent | sin | 21 | NA |
| 142 | 175.61 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 158 | 175.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 166 | 176.13 | radiation | 10.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 167 | 176.16 | humidity | 80.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 173 | 176.21 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 176 | 176.27 | humidity | 80.0 | 30 | > th | dose independent | rect. | 6 | 19 |
| 177 | 176.27 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 209 | 176.74 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 8 |
| 225 | 176.89 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 17 |
| 249 | 177.20 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 275 | 177.37 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 296 | 177.52 | radiation | 30.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 300 | 177.56 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 310 | 177.63 | humidity | 80.0 | 90 | < th | dose independent | rect. | 22 | 21 |
| 326 | 177.80 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 331 | 177.81 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 332 | 177.83 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 23 |
| 335 | 177.88 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 9 |
| 336 | 177.90 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 3 |
| 339 | 177.91 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 10 |
| 354 | 178.05 | humidity | 80.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 375 | 178.15 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 392 | 178.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 406 | 178.32 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 463 | 178.59 | humidity | 80.0 | 10 | > th | dose independent | rect. | 10 | 12 |
| 464 | 178.60 | humidity | 60.0 | 90 | > th | dose independent | rect. | 19 | 14 |
| 496 | 178.74 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 501 | 178.78 | humidity | 70.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 519 | 178.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 10 |
| 520 | 178.82 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 10 |
| 521 | 178.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 14 |
| 523 | 178.82 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 14 |
| 532 | 178.87 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 550 | 178.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 561 | 179.05 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 627 | 179.31 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 713 | 179.63 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 720 | 179.66 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 747 | 179.77 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 749 | 179.77 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 771 | 179.87 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 10 |
| 824 | 180.06 | radiation | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 847 | 180.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 851 | 180.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 854 | 180.15 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 872 | 180.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 928 | 180.41 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 10 |
| 946 | 180.48 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 22 |
| 982 | 180.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 14 |
| 983 | 180.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 14 |