Os07g0537000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor protein kinase.
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Os07g0537000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.69 | 0.366 | 8.83 | -0.146 | 0.652 | -2.43 | -0.135 | -1.98 | 0.283 | 17.5 | 29.8 | 5415 | -- | -- |
| 63.36 | 0.371 | 8.89 | -0.524 | 0.648 | -2.25 | -0.18 | -- | 0.233 | 17.5 | 44.25 | 5371 | -- | -- |
| 60.68 | 0.363 | 8.83 | -0.129 | 0.646 | -2.44 | -- | -2.08 | 0.278 | 17.6 | 29.19 | 5393 | -- | -- |
| 63.42 | 0.371 | 8.89 | -0.524 | 0.651 | -2.24 | -- | -- | 0.232 | 17.6 | 53.49 | 5396 | -- | -- |
| 73.85 | 0.4 | 8.85 | 0.0578 | -- | -2.25 | -- | -1.28 | 0.283 | -- | 31.13 | 1962 | -- | -- |
| 145.92 | 0.566 | 8.79 | 0.535 | 0.609 | -- | 0.288 | -- | 0.685 | 18.6 | -- | -- | -- | -- |
| 146.06 | 0.566 | 8.79 | 0.532 | 0.612 | -- | -- | -- | 0.686 | 18.4 | -- | -- | -- | -- |
| 75.89 | 0.406 | 8.88 | -0.241 | -- | -2.27 | -- | -- | 0.246 | -- | 41.8 | 1955 | -- | -- |
| 64.36 | 0.374 | 8.87 | -- | 0.619 | -1.95 | -- | -- | 0.303 | 16.9 | 33.64 | 2407 | -- | -- |
| 165.52 | 0.601 | 8.78 | 0.516 | -- | -- | -- | -- | 0.673 | -- | -- | -- | -- | -- |
| 153.53 | 0.58 | 8.81 | -- | 0.605 | -- | -- | -- | 0.627 | 18.4 | -- | -- | -- | -- |
| 77.2 | 0.409 | 8.87 | -- | -- | -2.17 | -- | -- | 0.288 | -- | 43.66 | 1950 | -- | -- |
| 172.55 | 0.613 | 8.79 | -- | -- | -- | -- | -- | 0.616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 55.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 4 | 55.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 5 | 55.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 6 | 55.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 19 | 55.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 27 | 55.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 29 | 55.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 31 | 55.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 36 | 55.63 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 39 | 55.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 40 | 55.68 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 41 | 55.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 118 | 55.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 127 | 55.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 129 | 55.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 141 | 56.02 | radiation | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 159 | 56.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 16 |
| 160 | 56.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 187 | 56.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 191 | 56.29 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 192 | 56.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 209 | 56.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 213 | 56.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 215 | 56.38 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 221 | 56.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 227 | 56.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 253 | 56.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 255 | 56.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 270 | 56.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 301 | 56.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 303 | 56.51 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 370 | 56.62 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 429 | 56.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 452 | 56.76 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 464 | 56.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 477 | 56.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 503 | 56.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 519 | 56.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 525 | 56.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 562 | 56.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 577 | 56.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 839 | 57.32 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 942 | 57.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 955 | 57.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 987 | 57.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 992 | 57.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 2 |