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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0534500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ARK3 product/receptor-like serine/threonine protein kinase ARK3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.0459) R2 : 0.856
β1 : 2.78 (0.168) R2dD : 0.0899 R2D : 0.0265
β2 : 5.04 (0.128) R2dC : 0.572 R2C : 0.629
β3 : 1.25 (0.138) R2dE : 0.0313 R2E : 0.128
β4 : 3.26 (0.534) R2dD*C : 0.0118 R2D*C : -0.00232
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.67 (0.0994) R2dN8 : 0.123 R2N8 : 0.0679
σ : 0.855
deviance : 337.37
__
_____
C
peak time of C : 19
E
wheather : humidity
threshold : 60.49
memory length : 29
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 5.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.35 0.863 5.87 2.77 5.03 1.24 3.31 -0.144 1.67 19 60.34 30 12 5.81
337.37 0.855 5.88 2.78 5.04 1.25 3.26 -- 1.67 19 60.49 29 12 5.8
360.5 0.884 5.88 2.74 5.04 1.25 -- 1.35 1.69 19 60 31 12.1 5.8
364.76 0.89 5.87 2.76 5.03 1.24 -- -- 1.67 19 61.07 28 12 5.8
643.37 1.18 5.86 2.11 -- 4.07 -- 0.879 1.3 -- 41 2054 12.5 2.8
387.88 0.923 5.84 2.72 5.51 -- 3.07 -- 1.84 18.7 -- -- -- --
411.84 0.95 5.84 2.67 5.52 -- -- -- 1.85 18.7 -- -- -- --
425.16 0.96 5.6 2.84 -- 5.33 -- -- 2.16 -- 20.86 523 8.6 11.6
560.27 1.1 5.93 -- 4.98 1.11 -- -- 1.47 19 61.15 28 12.5 5.74
2004.19 2.09 5.73 2.54 -- -- -- -- 1.74 -- -- -- -- --
599.84 1.15 5.91 -- 5.49 -- -- -- 1.55 18.8 -- -- -- --
603.01 1.14 5.77 -- -- 5.33 -- -- 1.54 -- 30.64 506 8.7 11.7
2174.99 2.18 5.79 -- -- -- -- -- 1.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.29 humidity 60.0 30 > th dose independent rect. 12 6
3 341.95 radiation 10.0 90 < th dose dependent rect. 23 18
4 342.48 humidity 50.0 90 > th dose dependent rect. 23 18
5 343.22 temperature 15.0 270 > th dose independent rect. 22 18
6 343.45 temperature 15.0 270 > th dose independent rect. 21 20
8 343.61 humidity 60.0 90 > th dose dependent rect. 18 5
9 343.62 atmosphere 1000.0 30 > th dose dependent rect. 12 6
10 343.70 humidity 50.0 10 > th dose dependent rect. 12 6
14 344.21 humidity 50.0 10 > th dose dependent rect. 23 19
17 344.75 humidity 70.0 90 > th dose independent rect. 18 5
18 344.96 temperature 15.0 270 > th dose independent rect. 9 8
19 345.01 radiation 1.0 270 < th dose independent rect. 21 11
21 345.05 atmosphere 1000.0 30 > th dose independent rect. 12 16
22 345.18 radiation 1.0 270 < th dose dependent rect. 21 11
23 345.28 wind 7.0 270 < th dose independent rect. 22 18
25 345.41 temperature 15.0 30 > th dose independent rect. 12 16
26 345.45 wind 7.0 270 < th dose independent rect. 16 6
33 345.96 humidity 60.0 30 > th dose independent rect. 12 18
36 346.07 atmosphere 1000.0 30 > th dose independent rect. 12 18
39 346.12 wind 7.0 270 < th dose independent rect. 17 16
40 346.15 wind 7.0 270 < th dose independent rect. 17 4
42 346.16 humidity 50.0 270 > th dose independent rect. 17 16
48 346.35 radiation 1.0 270 < th dose dependent rect. 21 19
49 346.52 radiation 1.0 270 < th dose independent rect. 21 18
53 346.63 atmosphere 995.0 270 > th dose independent rect. 22 18
54 346.63 radiation 40.0 270 < th dose dependent rect. 16 6
61 346.87 radiation 20.0 270 < th dose independent rect. 16 6
62 346.87 wind 9.0 270 < th dose dependent rect. 17 4
63 346.88 radiation 10.0 270 < th dose independent rect. 17 4
67 346.99 radiation 20.0 270 < th dose dependent rect. 17 4
70 347.10 humidity 50.0 270 > th dose independent rect. 16 6
76 347.26 temperature 15.0 270 > th dose independent rect. 21 9
83 347.45 temperature 10.0 270 > th dose independent rect. 16 6
84 347.45 radiation 40.0 270 < th dose independent rect. 16 6
89 347.53 wind 9.0 270 < th dose independent rect. 9 8
90 347.54 radiation 30.0 90 < th dose dependent rect. 23 10
92 347.58 temperature 30.0 270 < th dose independent rect. 17 4
94 347.59 wind 7.0 270 < th dose independent rect. 23 16
95 347.59 humidity 60.0 30 > th dose independent rect. 12 16
96 347.60 precipitation 0.1 270 < th dose independent rect. 12 15
97 347.60 precipitation 0.1 270 < th dose dependent rect. 12 15
102 347.66 precipitation 0.1 30 < th dose independent rect. 12 16
103 347.66 precipitation 0.1 30 < th dose dependent rect. 12 16
107 347.78 temperature 15.0 30 > th dose independent rect. 12 18
109 347.83 atmosphere 1015.0 270 < th dose independent rect. 9 8
110 347.83 temperature 10.0 270 > th dose independent rect. 17 16
116 348.00 precipitation 0.1 270 < th dose independent rect. 3 9
118 348.00 humidity 50.0 270 > th dose dependent rect. 18 2
120 348.00 precipitation 0.1 270 < th dose dependent rect. 3 9
124 348.13 radiation 40.0 270 < th dose independent rect. 17 16
128 348.19 temperature 10.0 270 > th dose independent rect. 17 4
135 348.21 atmosphere 1010.0 270 < th dose independent rect. 17 4
140 348.39 humidity 70.0 270 > th dose independent rect. 18 2
145 348.41 wind 1.0 270 > th dose independent rect. 9 8
148 348.43 precipitation 0.1 30 < th dose independent rect. 4 8
149 348.43 precipitation 0.1 30 < th dose dependent rect. 4 8
150 348.44 wind 9.0 270 < th dose dependent rect. 16 6
153 348.50 temperature 10.0 30 > th dose independent rect. 4 8
155 348.50 atmosphere 995.0 30 > th dose independent rect. 4 8
156 348.50 atmosphere 1015.0 30 < th dose independent rect. 4 8
160 348.52 precipitation 0.1 270 < th dose independent rect. 9 8
162 348.52 precipitation 0.1 270 < th dose dependent rect. 9 8
166 348.53 humidity 60.0 10 > th dose dependent rect. 18 5
172 348.61 temperature 30.0 30 < th dose independent rect. 12 6
173 348.63 temperature 10.0 270 > th dose independent rect. 3 9
174 348.63 atmosphere 995.0 270 > th dose independent rect. 3 9
175 348.63 atmosphere 1015.0 270 < th dose independent rect. 3 9
178 348.65 atmosphere 1005.0 30 > th dose independent rect. 12 6
186 348.81 temperature 30.0 270 < th dose independent rect. 17 16
200 348.90 humidity 50.0 270 > th dose independent rect. 22 18
201 348.92 atmosphere 1010.0 270 < th dose independent rect. 16 6
203 348.92 atmosphere 995.0 270 > th dose independent rect. 21 20
208 348.95 radiation 1.0 30 > th dose independent rect. 5 7
233 349.11 atmosphere 995.0 270 > th dose independent rect. 9 8
239 349.19 wind 9.0 30 < th dose independent rect. 12 16
241 349.22 atmosphere 1015.0 270 < th dose independent rect. 6 15
251 349.33 temperature 30.0 270 < th dose independent rect. 18 2
281 349.53 precipitation 0.1 270 < th dose independent rect. 22 18
282 349.53 precipitation 0.1 270 < th dose dependent rect. 22 18
307 349.73 temperature 30.0 270 < th dose independent rect. 21 9
308 349.73 humidity 50.0 270 > th dose independent rect. 21 9
311 349.73 atmosphere 995.0 270 > th dose independent rect. 21 9
312 349.73 radiation 20.0 270 < th dose independent rect. 21 9
315 349.73 temperature 10.0 270 > th dose independent rect. 6 15
325 349.85 wind 1.0 10 > th dose independent rect. 6 6
333 349.93 wind 9.0 270 < th dose independent rect. 3 9
335 349.96 humidity 60.0 30 > th dose independent rect. 12 20
337 350.00 temperature 10.0 1440 > th dose independent rect. 7 6
340 350.00 atmosphere 995.0 1440 > th dose independent rect. 7 6
342 350.00 temperature 10.0 1440 > th dose independent rect. 13 18
348 350.04 wind 9.0 270 < th dose independent rect. 21 9
349 350.05 wind 1.0 270 > th dose independent rect. 17 4
352 350.06 precipitation 0.1 30 < th dose independent rect. 12 18
355 350.06 temperature 10.0 30 > th dose dependent rect. 12 16
356 350.06 precipitation 0.1 30 < th dose dependent rect. 12 18
358 350.11 temperature 10.0 1440 > th dose independent rect. 5 8
361 350.11 atmosphere 995.0 1440 > th dose independent rect. 5 8
362 350.11 temperature 10.0 1440 > th dose independent rect. 13 16
371 350.15 humidity 50.0 270 > th dose dependent rect. 12 2
374 350.17 humidity 50.0 270 > th dose independent rect. 3 8
385 350.30 atmosphere 1000.0 30 > th dose independent rect. 12 20
388 350.32 atmosphere 1005.0 270 > th dose independent rect. 12 2
391 350.38 precipitation 0.1 30 < th dose independent rect. 6 6
392 350.38 precipitation 0.1 30 < th dose dependent rect. 6 6
396 350.41 precipitation 0.1 270 < th dose independent rect. 21 20
397 350.41 precipitation 0.1 270 < th dose dependent rect. 21 20
398 350.43 temperature 10.0 30 > th dose independent rect. 6 6
400 350.43 atmosphere 995.0 30 > th dose independent rect. 6 6
401 350.43 atmosphere 1015.0 30 < th dose independent rect. 6 6
443 350.79 atmosphere 1015.0 270 < th dose independent rect. 22 18
452 350.84 precipitation 0.1 270 < th dose independent rect. 21 9
453 350.84 precipitation 0.1 270 < th dose dependent rect. 21 9
458 350.88 atmosphere 995.0 270 > th dose independent rect. 17 4
464 350.90 wind 9.0 30 < th dose independent rect. 12 18
465 350.91 radiation 1.0 270 < th dose dependent rect. 18 2
468 350.92 wind 9.0 30 < th dose independent rect. 4 8
472 350.95 atmosphere 995.0 270 > th dose independent rect. 17 16
476 351.03 humidity 50.0 30 > th dose independent rect. 4 8
504 351.25 precipitation 0.1 270 < th dose independent rect. 16 6
505 351.25 precipitation 0.1 270 < th dose dependent rect. 16 6
511 351.31 precipitation 0.1 270 < th dose independent rect. 17 16
512 351.31 precipitation 0.1 270 < th dose dependent rect. 17 16
513 351.32 wind 9.0 270 < th dose independent rect. 6 15
519 351.37 humidity 60.0 270 > th dose independent rect. 12 3
525 351.39 atmosphere 995.0 270 > th dose independent rect. 16 6
530 351.41 precipitation 0.1 270 < th dose independent rect. 17 4
531 351.41 precipitation 0.1 270 < th dose dependent rect. 17 4
547 351.48 wind 1.0 270 > th dose independent rect. 16 6
568 351.63 radiation 1.0 270 > th dose independent rect. 9 8
587 351.74 humidity 50.0 30 > th dose independent rect. 6 6
671 352.36 wind 1.0 30 > th dose dependent rect. 6 6
677 352.38 temperature 10.0 30 > th dose dependent rect. 12 18
688 352.46 wind 9.0 30 < th dose independent rect. 6 6
690 352.46 atmosphere 1000.0 270 > th dose dependent rect. 12 3
733 352.77 atmosphere 1010.0 30 < th dose independent rect. 12 6
736 352.78 wind 9.0 30 < th dose independent rect. 12 6
756 352.89 temperature 10.0 30 > th dose independent rect. 12 6
759 352.89 temperature 10.0 30 > th dose independent rect. 18 18
761 352.92 atmosphere 995.0 30 > th dose independent rect. 18 18
769 352.94 temperature 10.0 30 > th dose dependent rect. 4 8
781 353.01 temperature 15.0 30 > th dose independent rect. 12 20
782 353.02 atmosphere 1015.0 270 < th dose independent rect. 23 16
783 353.03 humidity 50.0 270 > th dose independent rect. 10 6
791 353.09 precipitation 0.1 270 < th dose independent rect. 6 15
792 353.09 precipitation 0.1 270 < th dose dependent rect. 6 15
802 353.14 precipitation 0.1 30 < th dose independent rect. 12 6
804 353.14 precipitation 0.1 30 < th dose dependent rect. 12 6
810 353.18 humidity 50.0 90 > th dose dependent rect. 23 9
823 353.29 radiation 1.0 270 < th dose dependent rect. 8 13
826 353.30 humidity 50.0 10 > th dose dependent rect. 23 9
831 353.36 atmosphere 1015.0 30 < th dose independent rect. 18 18
840 353.40 radiation 40.0 270 < th dose dependent rect. 17 16
850 353.48 temperature 15.0 10 > th dose independent rect. 23 9
852 353.50 radiation 20.0 90 < th dose independent rect. 23 9
871 353.62 atmosphere 995.0 30 > th dose dependent rect. 4 8
875 353.65 temperature 30.0 30 < th dose independent rect. 12 18
888 353.70 temperature 10.0 1440 > th dose independent rect. 13 6
892 353.70 temperature 10.0 1440 > th dose independent rect. 19 18
895 353.70 atmosphere 995.0 1440 > th dose independent rect. 19 18
904 353.78 atmosphere 995.0 30 > th dose dependent rect. 6 6
920 353.87 atmosphere 1000.0 30 > th dose independent rect. 12 23
952 354.08 wind 1.0 30 > th dose independent rect. 12 6
988 354.16 radiation 1.0 270 < th dose independent rect. 8 13