Os07g0534300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0534300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.5 | 0.727 | 6.11 | -0.0255 | 2 | 1.56 | 0.791 | 1.6 | 1.29 | 21.2 | 21 | 6873 | -- | -- |
| 244.68 | 0.729 | 6.19 | -0.274 | 2.07 | 1.46 | 1.22 | -- | 1.23 | 21.1 | 21.2 | 6812 | -- | -- |
| 241.66 | 0.724 | 6.1 | -0.0267 | 1.99 | 1.6 | -- | 1.77 | 1.29 | 21.3 | 21.02 | 6822 | -- | -- |
| 244.96 | 0.729 | 6.17 | -0.314 | 2 | 1.27 | -- | -- | 1.22 | 21.3 | 21.2 | 6932 | -- | -- |
| 472 | 1.01 | 6.05 | -0.0708 | -- | 1.77 | -- | 1.92 | 1.24 | -- | 21 | 6684 | -- | -- |
| 278.73 | 0.783 | 6.08 | 0.621 | 2.04 | -- | 0.852 | -- | 1.66 | 21.3 | -- | -- | -- | -- |
| 281.26 | 0.785 | 6.08 | 0.588 | 2.03 | -- | -- | -- | 1.66 | 21.4 | -- | -- | -- | -- |
| 381.08 | 0.909 | 6.14 | 0.231 | -- | 1.79 | -- | -- | 1.2 | -- | 25.9 | 717 | -- | -- |
| 247.03 | 0.732 | 6.17 | -- | 1.99 | 1.14 | -- | -- | 1.27 | 21.3 | 21.4 | 6833 | -- | -- |
| 522.29 | 1.07 | 6.02 | 0.599 | -- | -- | -- | -- | 1.65 | -- | -- | -- | -- | -- |
| 290.38 | 0.797 | 6.09 | -- | 2.03 | -- | -- | -- | 1.6 | 21.4 | -- | -- | -- | -- |
| 380.07 | 0.908 | 6.14 | -- | -- | 1.79 | -- | -- | 1.12 | -- | 25.86 | 716 | -- | -- |
| 531.77 | 1.08 | 6.04 | -- | -- | -- | -- | -- | 1.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 7 | 237.15 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 8 |
| 14 | 238.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 22 | 238.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 24 | 238.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 25 | 238.87 | wind | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 28 | 239.00 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 35 | 239.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 36 | 239.30 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 41 | 239.43 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 58 | 239.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 63 | 240.04 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 65 | 240.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 72 | 240.31 | temperature | 20 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 73 | 240.32 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 76 | 240.36 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 81 | 240.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 100 | 240.49 | temperature | 20 | 14400 | < th | dose dependent | sin | 10 | NA |
| 130 | 240.59 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 159 | 240.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 197 | 240.77 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 208 | 240.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 227 | 240.86 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 230 | 240.86 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 239 | 240.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 376 | 241.23 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 419 | 241.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 438 | 241.51 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 455 | 241.61 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 465 | 241.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 466 | 241.67 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 538 | 242.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 544 | 242.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 8 |
| 545 | 242.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 8 |
| 562 | 242.17 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 582 | 242.23 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 584 | 242.24 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 588 | 242.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 606 | 242.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 607 | 242.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 617 | 242.35 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 632 | 242.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 686 | 242.60 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 698 | 242.65 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 705 | 242.67 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 725 | 242.73 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 760 | 242.85 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 807 | 242.97 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 817 | 243.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 859 | 243.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 862 | 243.12 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 898 | 243.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 922 | 243.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 930 | 243.27 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 932 | 243.28 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 984 | 243.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 986 | 243.38 | temperature | 20 | 14400 | < th | dose independent | sin | 6 | NA |
| 991 | 243.39 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |