Os07g0534000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid lumenal 19.6 kDa protein, chloroplast precursor.
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Os07g0534000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid lumenal 19.6 kDa protein, chloroplast precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.03 | 0.594 | 9.41 | -0.0835 | 1.89 | -0.798 | 0.512 | 1.63 | -0.87 | 19.7 | 20.6 | 255 | -- | -- |
| 169.17 | 0.606 | 9.42 | -0.321 | 1.89 | -0.993 | 0.914 | -- | -0.894 | 19.6 | 20.4 | 208 | -- | -- |
| 160.63 | 0.59 | 9.41 | -0.0668 | 1.9 | -0.773 | -- | 1.79 | -0.867 | 19.7 | 20.5 | 289 | -- | -- |
| 170.64 | 0.608 | 9.44 | -0.388 | 1.88 | -0.954 | -- | -- | -0.936 | 19.6 | 20.5 | 197 | -- | -- |
| 343.55 | 0.868 | 9.38 | -0.273 | -- | -0.872 | -- | 1.07 | -0.928 | -- | 20.5 | 289 | -- | -- |
| 201.56 | 0.666 | 9.49 | -0.658 | 1.85 | -- | 0.67 | -- | -1.12 | 19.9 | -- | -- | -- | -- |
| 202.88 | 0.667 | 9.49 | -0.676 | 1.85 | -- | -- | -- | -1.12 | 19.9 | -- | -- | -- | -- |
| 349.67 | 0.875 | 9.4 | -0.467 | -- | -0.924 | -- | -- | -0.971 | -- | 20.5 | 289 | -- | -- |
| 174.31 | 0.615 | 9.44 | -- | 1.9 | -1.04 | -- | -- | -0.887 | 19.5 | 20.4 | 201 | -- | -- |
| 389.38 | 0.922 | 9.44 | -0.696 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 214.92 | 0.686 | 9.47 | -- | 1.86 | -- | -- | -- | -1.05 | 19.9 | -- | -- | -- | -- |
| 347.8 | 0.869 | 9.4 | -- | -- | -1.77 | -- | -- | -0.903 | -- | 18 | 3042 | -- | -- |
| 402.15 | 0.936 | 9.42 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.83 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 4 | 152.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 5 | 152.15 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 13 | 153.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 20 | 153.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 21 | 153.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 26 | 153.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 28 | 153.53 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 36 | 153.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 37 | 153.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 41 | 153.87 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 54 | 154.10 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 57 | 154.15 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 61 | 154.28 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 62 | 154.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 75 | 154.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 78 | 154.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 83 | 154.61 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 85 | 154.62 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 110 | 154.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 135 | 155.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 12 |
| 146 | 155.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 148 | 155.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 150 | 155.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 188 | 155.54 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 214 | 155.74 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 223 | 155.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 232 | 155.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 234 | 155.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 236 | 155.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 239 | 155.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 255 | 155.90 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 290 | 156.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 307 | 156.20 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 309 | 156.21 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 322 | 156.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 323 | 156.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 343 | 156.40 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 359 | 156.51 | temperature | 20.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 367 | 156.55 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 435 | 156.76 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 442 | 156.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 449 | 156.82 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 487 | 156.94 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 510 | 157.03 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 519 | 157.07 | temperature | 20.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 531 | 157.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 544 | 157.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 619 | 157.35 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 681 | 157.53 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 696 | 157.56 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 726 | 157.65 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 736 | 157.68 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 786 | 157.85 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 817 | 157.92 | temperature | 20.0 | 270 | > th | dose independent | sin | 7 | NA |
| 867 | 158.04 | humidity | 90.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 924 | 158.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 959 | 158.24 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 21 |