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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0533000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.52 (0.0262) R2 : 0.482
β1 : 1.68 (0.0958) R2dD : 0.361 R2D : 0.183
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.784 (0.0559) R2dN8 : 0.299 R2N8 : 0.122
σ : 0.491
deviance : 110.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.08 0.431 9.44 2.26 0.427 -0.248 -1.41 -3.31 0.936 17.3 23 1888 -- --
91.84 0.446 9.51 1.93 0.412 0.81 -1.23 -- 0.879 17.3 18.6 2761 -- --
88.99 0.439 9.45 2.24 0.424 -0.236 -- -3.29 0.93 17.4 22.8 1858 -- --
95.25 0.455 9.51 1.95 0.396 0.893 -- -- 0.88 17.6 18.49 2761 -- --
97.8 0.461 9.44 2.21 -- -0.145 -- -3.44 0.921 -- 22.6 1440 -- --
96.73 0.461 9.52 1.69 0.43 -- -1.33 -- 0.8 17.3 -- -- -- --
101.12 0.471 9.53 1.69 0.423 -- -- -- 0.794 17.5 -- -- -- --
103.35 0.473 9.5 1.96 -- 0.972 -- -- 0.881 -- 18.54 2739 -- --
121.17 0.513 9.63 -- 0.446 -1.33 -- -- 0.323 16.5 23.3 33361 -- --
110.45 0.491 9.52 1.68 -- -- -- -- 0.784 -- -- -- -- --
176.5 0.621 9.57 -- 0.396 -- -- -- 0.606 17.7 -- -- -- --
126.61 0.524 9.65 -- -- -1.23 -- -- 0.237 -- 28.1 47520 -- --
184.64 0.634 9.56 -- -- -- -- -- 0.598 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.14 wind 7 4320 > th dose independent rect. 17 2
2 80.30 wind 7 4320 < th dose independent rect. 17 2
7 80.66 radiation 1 1440 < th dose independent rect. 13 1
8 80.66 radiation 1 1440 < th dose dependent rect. 13 1
9 80.77 radiation 1 1440 < th dose independent rect. 10 4
10 80.77 radiation 1 1440 < th dose dependent rect. 10 4
16 80.91 wind 7 4320 < th dose independent rect. 15 6
17 80.92 radiation 1 1440 > th dose independent rect. 13 1
22 80.98 wind 7 4320 > th dose independent rect. 15 6
44 81.32 wind 5 4320 > th dose dependent rect. 17 2
62 81.69 radiation 1 1440 > th dose independent rect. 9 6
83 82.05 wind 7 4320 < th dose independent rect. 15 10
87 82.11 wind 7 4320 > th dose independent rect. 15 10
91 82.17 wind 5 4320 > th dose dependent rect. 15 10
92 82.18 wind 7 4320 < th dose independent rect. 15 15
97 82.20 wind 7 4320 > th dose independent rect. 15 16
105 82.27 wind 5 4320 > th dose dependent rect. 15 15
114 82.34 wind 5 4320 > th dose independent rect. 17 8
118 82.37 atmosphere 1005 720 > th dose independent rect. 18 5
128 82.46 wind 5 4320 > th dose independent rect. 17 11
131 82.51 wind 1 90 < th dose independent rect. 24 5
134 82.52 wind 5 4320 < th dose independent rect. 17 8
139 82.56 wind 5 4320 < th dose independent rect. 17 11
148 82.61 humidity 70 14400 < th dose dependent rect. 21 1
174 82.74 atmosphere 1005 720 > th dose independent rect. 18 7
215 83.05 wind 5 4320 > th dose independent sin 13 NA
226 83.10 wind 1 720 < th dose independent rect. 23 1
249 83.20 wind 5 4320 < th dose independent sin 13 NA
292 83.36 wind 5 4320 > th dose dependent sin 14 NA
352 83.67 wind 1 270 < th dose dependent rect. 23 2
374 83.85 atmosphere 1005 720 < th dose independent rect. 18 7
394 83.95 wind 3 270 < th dose dependent rect. 23 6
412 84.06 humidity 60 14400 > th dose independent rect. 3 5
416 84.08 atmosphere 1005 720 < th dose independent rect. 18 5
435 84.21 wind 1 270 < th dose independent rect. 1 1
467 84.33 temperature 30 720 < th dose dependent rect. 17 10
478 84.39 temperature 20 4320 > th dose independent rect. 19 4
495 84.44 temperature 20 4320 < th dose independent rect. 19 4
515 84.51 radiation 1 1440 > th dose independent rect. 9 1
536 84.57 temperature 20 270 > th dose independent rect. 11 22
561 84.64 humidity 60 14400 > th dose independent rect. 5 3
570 84.66 temperature 20 270 > th dose independent rect. 11 19
585 84.70 wind 3 4320 > th dose dependent rect. 24 1
641 84.85 temperature 25 720 < th dose dependent sin 15 NA
686 84.98 temperature 10 720 > th dose dependent rect. 17 12
724 85.08 humidity 60 14400 < th dose independent rect. 6 1
726 85.08 humidity 60 14400 < th dose independent rect. 20 1
728 85.08 radiation 20 14400 > th dose independent rect. 17 1
780 85.08 humidity 60 14400 < th dose dependent rect. 6 1
784 85.08 radiation 20 14400 > th dose dependent rect. 17 1
847 85.11 wind 1 1440 > th dose independent rect. 23 1
867 85.13 humidity 70 720 < th dose dependent rect. 18 14
876 85.15 temperature 25 720 < th dose dependent rect. 10 18
887 85.18 humidity 60 14400 > th dose independent rect. 7 1
895 85.20 temperature 20 270 > th dose independent rect. 23 7
903 85.21 humidity 80 4320 > th dose dependent rect. 9 2
918 85.24 temperature 20 1440 > th dose independent rect. 18 16
919 85.24 temperature 20 1440 > th dose independent rect. 19 19
954 85.30 humidity 70 720 < th dose dependent rect. 18 2