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Os07g0532800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.37 (0.0718) R2 : 0.732
β1 : 2.67 (0.26) R2dD : 0.112 R2D : -0.0336
β2 : 2.23 (0.129) R2dC : 0.18 R2C : -0.0563
β3 : -3.37 (0.302) R2dE : 0.235 R2E : 0.0503
β4 : -3.84 (0.491) R2dD*C : 0.037 R2D*C : -0.142
β5 : -11.5 (1.09) R2dD*E : 0.2 R2D*E : -0.386
γ1 : 2.26 (0.138) R2dN8 : 0.306 R2N8 : 0.145
σ : 1.01
deviance : 466.25
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_____
C
peak time of C : 0.231
E
wheather : radiation
threshold : 20.75
memory length : 3949
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 1.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
466.25 1.01 8.37 2.67 2.23 -3.37 -3.84 -11.5 2.26 0.231 20.75 3949 16 1.33
521.88 1.06 8.66 3.03 2.45 -2.67 -4.65 -- 2.71 0.275 -0.7103 5372 15.6 2.27
529.15 1.07 8.37 2.82 2.24 -3.36 -- -11.8 2.25 0.165 20.81 3940 16 0.97
599.55 1.14 8.69 3.22 2.34 -2.52 -- -- 2.61 0.197 -0.0001932 5414 15.7 1.26
836.16 1.35 8.36 3.03 -- -3.18 -- -12 2.31 -- 20.49 3935 16.1 2.54
615.79 1.16 8.75 3.93 2.04 -- -4.24 -- 2.41 0.151 -- -- -- --
693.17 1.23 8.74 4.1 2.06 -- -- -- 2.43 24 -- -- -- --
882.58 1.38 8.58 2.95 -- -2.17 -- -- 2.73 -- -3.306 5799 16.8 1.54
690.68 1.22 8.73 -- 2.5 -3.88 -- -- 2.69 0.323 -0.1769 19814 17.6 6.8
959.97 1.45 8.7 4.17 -- -- -- -- 2.46 -- -- -- -- --
1137.07 1.58 8.84 -- 2.11 -- -- -- 1.97 0.109 -- -- -- --
954.42 1.44 8.68 -- -- -4.05 -- -- 2.73 -- 0.1471 20177 17.6 8.39
1418.17 1.76 8.8 -- -- -- -- -- 1.99 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 455.17 wind 9.0 43200 > th dose dependent rect. 20 1
3 462.87 humidity 50.0 14400 > th dose independent rect. 16 19
4 463.88 wind 7.0 43200 < th dose independent rect. 18 3
5 465.49 wind 7.0 43200 < th dose independent rect. 20 1
6 465.67 wind 7.0 43200 > th dose independent rect. 18 3
7 467.02 wind 7.0 43200 > th dose independent rect. 20 1
9 469.71 wind 7.0 43200 > th dose dependent rect. 18 3
11 471.40 humidity 50.0 14400 > th dose independent rect. 17 17
13 472.85 wind 9.0 43200 > th dose dependent rect. 17 13
15 473.12 humidity 50.0 14400 < th dose independent rect. 16 19
17 474.03 wind 9.0 43200 > th dose independent rect. 17 14
24 475.57 humidity 60.0 14400 < th dose dependent rect. 16 18
27 476.31 wind 9.0 43200 < th dose independent rect. 17 14
30 476.61 humidity 60.0 14400 < th dose dependent rect. 17 16
38 477.36 precipitation 0.1 14400 < th dose independent rect. 17 6
39 477.36 precipitation 0.1 14400 < th dose dependent rect. 17 6
40 477.46 precipitation 0.1 14400 > th dose independent rect. 17 6
45 477.72 wind 9.0 43200 > th dose dependent rect. 17 7
60 479.13 wind 9.0 43200 > th dose independent rect. 17 8
69 479.68 radiation 1.0 43200 < th dose dependent rect. 1 1
71 479.76 humidity 90.0 14400 < th dose independent rect. 21 1
76 480.01 precipitation 0.1 14400 > th dose dependent rect. 17 9
87 480.62 precipitation 0.1 43200 > th dose independent rect. 17 1
88 480.62 precipitation 0.1 43200 < th dose independent rect. 17 1
89 480.62 precipitation 0.1 43200 < th dose dependent rect. 17 1
90 480.80 precipitation 0.1 14400 > th dose dependent rect. 17 6
96 481.33 humidity 50.0 14400 < th dose independent sin 11 NA
97 481.34 precipitation 0.1 14400 > th dose independent rect. 17 8
100 481.42 precipitation 0.1 14400 < th dose independent rect. 17 8
101 481.42 radiation 20.0 4320 > th dose dependent rect. 16 1
109 481.42 precipitation 0.1 14400 < th dose dependent rect. 17 8
125 482.05 wind 9.0 43200 < th dose independent rect. 18 6
137 482.62 humidity 60.0 14400 < th dose dependent rect. 16 4
163 483.42 humidity 60.0 14400 < th dose independent rect. 17 16
171 484.05 humidity 80.0 14400 > th dose independent rect. 17 1
175 484.32 radiation 1.0 43200 < th dose dependent rect. 22 5
176 484.52 wind 9.0 43200 > th dose dependent rect. 20 10
185 484.98 wind 7.0 43200 > th dose independent rect. 15 18
188 485.10 humidity 50.0 14400 > th dose independent sin 11 NA
190 485.23 humidity 80.0 14400 < th dose independent rect. 17 1
195 485.50 wind 7.0 43200 < th dose independent rect. 15 18
199 485.77 wind 7.0 43200 > th dose dependent sin 12 NA
201 485.89 precipitation 0.1 43200 > th dose dependent rect. 17 1
206 486.09 wind 9.0 43200 > th dose independent sin 12 NA
228 486.72 wind 9.0 43200 > th dose dependent rect. 20 6
239 486.89 humidity 50.0 14400 < th dose independent rect. 15 3
281 487.46 wind 9.0 43200 < th dose independent sin 12 NA
283 487.47 humidity 50.0 14400 > th dose independent rect. 15 14
287 487.53 humidity 50.0 14400 > th dose independent rect. 15 8
290 487.56 humidity 50.0 14400 > th dose independent rect. 15 5
359 488.86 precipitation 0.1 14400 > th dose dependent rect. 11 15
368 489.01 precipitation 0.1 14400 > th dose dependent rect. 11 12
414 489.92 precipitation 0.1 14400 > th dose independent rect. 11 12
423 490.09 precipitation 0.1 14400 < th dose independent rect. 11 12
424 490.09 precipitation 0.1 14400 < th dose dependent rect. 11 12
428 490.17 humidity 60.0 14400 < th dose independent rect. 17 3
491 491.13 humidity 90.0 14400 > th dose independent rect. 21 1
508 491.43 humidity 60.0 14400 > th dose independent rect. 17 3
510 491.46 humidity 60.0 14400 > th dose independent rect. 17 13
517 491.59 humidity 60.0 14400 > th dose independent rect. 17 6
549 492.00 humidity 70.0 14400 < th dose independent rect. 19 13
628 493.29 precipitation 0.1 14400 > th dose dependent rect. 11 7
667 493.79 precipitation 0.1 14400 > th dose dependent sin 17 NA
707 494.42 humidity 80.0 14400 > th dose dependent rect. 18 1
783 496.36 precipitation 0.1 14400 > th dose dependent rect. 14 4
867 497.74 atmosphere 995.0 43200 < th dose dependent rect. 15 1
894 498.08 precipitation 0.1 14400 > th dose independent sin 18 NA
895 498.11 humidity 90.0 14400 < th dose independent rect. 18 4
899 498.22 precipitation 0.1 14400 < th dose independent sin 18 NA
900 498.22 precipitation 0.1 14400 < th dose dependent sin 18 NA
905 498.27 precipitation 0.1 14400 > th dose dependent rect. 20 22
971 499.09 humidity 80.0 14400 > th dose dependent rect. 21 1