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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0532600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.57 (0.0392) R2 : 0.745
β1 : -5.08 (0.148) R2dD : 0.756 R2D : 0.423
β2 : 1.5 (0.0971) R2dC : 0.15 R2C : -0.00185
β3 : -2.79 (0.192) R2dE : 0.156 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.31 (0.0882) R2dN8 : 0.192 R2N8 : -0.0722
σ : 0.719
deviance : 238.63
__
_____
C
peak time of C : 1.04
E
wheather : temperature
threshold : 24.2
memory length : 34
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.66 0.714 5.54 -4.86 1.52 -2.99 -0.395 -1.83 -1.26 1.02 24.1 35 -- --
234.89 0.714 5.57 -5.13 1.51 -2.79 -0.893 -- -1.31 1.01 24.15 33 -- --
231.19 0.708 5.54 -4.81 1.53 -3.02 -- -2.01 -1.26 1.01 24.1 34 -- --
238.63 0.719 5.57 -5.08 1.5 -2.79 -- -- -1.31 1.04 24.2 34 -- --
277.76 0.776 5.63 -5.47 -- -3.07 -- 1.67 -1.44 -- 45.29 979 -- --
344.91 0.871 5.46 -4.47 1.04 -- -0.937 -- -0.851 0.904 -- -- -- --
348.56 0.874 5.46 -4.44 1.04 -- -- -- -0.846 1.01 -- -- -- --
277.19 0.775 5.58 -5.27 -- -2.94 -- -- -1.46 -- 29.07 1004 -- --
857.24 1.37 5.37 -- 1.1 -0.848 -- -- -0.46 0.812 23.7 10 -- --
415.86 0.953 5.44 -4.4 -- -- -- -- -0.826 -- -- -- -- --
867.93 1.38 5.34 -- 0.969 -- -- -- -0.352 0.817 -- -- -- --
916.05 1.41 5.35 -- -- -0.759 -- -- -0.439 -- 35.3 949 -- --
926.54 1.42 5.33 -- -- -- -- -- -0.338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.83 temperature 25 270 < th dose dependent rect. 9 22
5 232.69 temperature 25 30 < th dose dependent rect. 5 23
7 233.27 wind 9 43200 > th dose dependent rect. 18 13
8 233.65 wind 9 43200 > th dose dependent rect. 18 11
13 234.31 temperature 25 30 < th dose dependent rect. 13 23
14 234.31 temperature 25 30 < th dose dependent rect. 23 23
16 234.33 temperature 25 30 < th dose dependent rect. 1 23
19 234.40 wind 9 43200 > th dose dependent rect. 18 9
20 234.41 temperature 25 30 < th dose dependent rect. 17 23
21 234.42 temperature 25 30 < th dose dependent no NA NA
23 234.43 temperature 25 30 < th dose dependent rect. 9 23
24 234.43 temperature 25 30 < th dose dependent rect. 21 23
25 234.46 temperature 10 1440 > th dose dependent rect. 20 1
26 234.48 wind 9 43200 > th dose dependent rect. 18 6
27 234.49 temperature 25 30 < th dose dependent rect. 15 23
28 234.50 temperature 25 30 < th dose dependent rect. 19 23
30 234.59 temperature 25 30 < th dose dependent rect. 7 23
42 235.02 temperature 30 1440 < th dose dependent rect. 20 1
50 235.22 temperature 25 30 < th dose dependent rect. 3 23
65 236.06 temperature 30 1440 < th dose dependent rect. 17 7
74 236.28 temperature 15 1440 > th dose dependent rect. 17 7
91 236.52 temperature 15 1440 > th dose dependent rect. 18 4
127 237.10 temperature 25 720 < th dose dependent rect. 7 17
143 237.29 temperature 10 720 > th dose dependent rect. 16 17
197 238.29 wind 9 43200 > th dose independent rect. 18 9
200 238.33 wind 9 43200 > th dose independent rect. 18 6
225 238.69 temperature 30 720 < th dose dependent rect. 15 16
232 238.78 wind 9 43200 > th dose independent rect. 18 13
285 239.42 temperature 15 1440 > th dose dependent sin 14 NA
322 239.70 temperature 30 1440 < th dose dependent sin 14 NA
374 240.17 temperature 25 720 < th dose dependent sin 18 NA
438 240.63 wind 9 43200 < th dose independent rect. 18 6
510 241.16 wind 9 43200 < th dose independent rect. 18 9
658 242.24 wind 9 43200 < th dose independent rect. 18 13
776 242.89 wind 9 43200 > th dose dependent rect. 18 4