Os07g0532500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os07g0532500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.64 | 0.36 | 12.4 | -0.675 | 0.737 | -0.642 | 0.493 | -0.228 | -0.439 | 21.2 | 5.779 | 1440 | -- | -- |
| 58.69 | 0.357 | 12.4 | -0.697 | 0.73 | -0.64 | 0.496 | -- | -0.433 | 21.1 | 5.467 | 1428 | -- | -- |
| 59.29 | 0.359 | 12.4 | -0.694 | 0.73 | -0.699 | -- | -0.432 | -0.44 | 20.9 | 4.86 | 1413 | -- | -- |
| 59.44 | 0.359 | 12.4 | -0.73 | 0.676 | -0.68 | -- | -- | -0.445 | 20.9 | 5.398 | 1403 | -- | -- |
| 59.3 | 0.359 | 12.4 | -0.719 | -- | -1.2 | -- | -0.637 | -0.532 | -- | 5.297 | 1152 | -- | -- |
| 67.21 | 0.384 | 12.4 | -0.627 | 0.731 | -- | 0.59 | -- | -0.33 | 21.3 | -- | -- | -- | -- |
| 68.44 | 0.387 | 12.4 | -0.648 | 0.731 | -- | -- | -- | -0.33 | 21.2 | -- | -- | -- | -- |
| 59.41 | 0.359 | 12.4 | -0.762 | -- | -1.25 | -- | -- | -0.473 | -- | 4.771 | 1156 | -- | -- |
| 71.7 | 0.394 | 12.4 | -- | 0.708 | -0.519 | -- | -- | -0.369 | 21 | 9.751 | 1419 | -- | -- |
| 99.42 | 0.466 | 12.4 | -0.645 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 79.5 | 0.417 | 12.4 | -- | 0.731 | -- | -- | -- | -0.258 | 21.1 | -- | -- | -- | -- |
| 72.76 | 0.397 | 12.4 | -- | -- | -1.17 | -- | -- | -0.38 | -- | 9.742 | 1095 | -- | -- |
| 110.39 | 0.49 | 12.4 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.68 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 2 | 54.86 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 3 | 55.22 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 5 | 55.87 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 8 | 56.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 17 | 56.40 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 19 | 56.56 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 27 | 56.62 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 35 | 56.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 39 | 56.84 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 50 | 56.93 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 51 | 56.95 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 56 | 56.98 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 72 | 57.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 76 | 57.04 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 89 | 57.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 104 | 57.12 | humidity | 60 | 43200 | > th | dose dependent | sin | 15 | NA |
| 123 | 57.17 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 124 | 57.17 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 137 | 57.21 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 139 | 57.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 150 | 57.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 18 |
| 169 | 57.27 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 231 | 57.35 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 232 | 57.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 243 | 57.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 260 | 57.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 270 | 57.39 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 279 | 57.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 395 | 57.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 531 | 57.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 532 | 57.55 | temperature | 25 | 43200 | < th | dose dependent | sin | 15 | NA |
| 568 | 57.56 | radiation | 10 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 601 | 57.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 657 | 57.59 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 658 | 57.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 725 | 57.61 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 757 | 57.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 829 | 57.64 | temperature | 10 | 43200 | > th | dose dependent | sin | 13 | NA |
| 866 | 57.65 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 867 | 57.65 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 905 | 57.66 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 907 | 57.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 953 | 57.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 965 | 57.67 | temperature | 20 | 43200 | > th | dose dependent | rect. | 24 | 1 |