Os07g0530100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tyrosyl-DNA phosphodiesterase family protein.
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Os07g0530100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tyrosyl-DNA phosphodiesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.41 | 0.685 | 6.46 | -0.461 | 1.59 | 1.64 | -0.306 | -0.307 | 0.224 | 18.4 | 21.5 | 1564 | -- | -- |
| 212.47 | 0.679 | 6.45 | -0.372 | 1.58 | 1.63 | -0.312 | -- | 0.246 | 18.4 | 21.33 | 1571 | -- | -- |
| 212.64 | 0.679 | 6.46 | -0.469 | 1.59 | 1.64 | -- | -0.349 | 0.221 | 18.4 | 21.56 | 1560 | -- | -- |
| 212.7 | 0.679 | 6.45 | -0.367 | 1.59 | 1.62 | -- | -- | 0.246 | 18.4 | 21.38 | 1563 | -- | -- |
| 260.69 | 0.752 | 6.37 | -0.102 | -- | 1.92 | -- | 0.19 | 0.364 | -- | 21.89 | 476 | -- | -- |
| 301.87 | 0.815 | 6.37 | 0.221 | 1.59 | -- | -0.407 | -- | 0.629 | 18.5 | -- | -- | -- | -- |
| 302.28 | 0.814 | 6.37 | 0.227 | 1.59 | -- | -- | -- | 0.628 | 18.5 | -- | -- | -- | -- |
| 246.16 | 0.731 | 6.44 | -0.41 | -- | 2.66 | -- | -- | 0.15 | -- | 21.01 | 482 | -- | -- |
| 215.83 | 0.684 | 6.44 | -- | 1.61 | 1.5 | -- | -- | 0.307 | 18.4 | 21.7 | 1536 | -- | -- |
| 433.6 | 0.973 | 6.33 | 0.187 | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
| 303.64 | 0.815 | 6.37 | -- | 1.59 | -- | -- | -- | 0.602 | 18.5 | -- | -- | -- | -- |
| 250.14 | 0.737 | 6.42 | -- | -- | 2.56 | -- | -- | 0.219 | -- | 21.53 | 482 | -- | -- |
| 434.52 | 0.973 | 6.34 | -- | -- | -- | -- | -- | 0.574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 3 | 209.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 210.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 10 | 211.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 12 | 211.46 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 18 |
| 14 | 211.83 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 15 | 211.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 19 | 212.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 32 | 213.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 33 | 213.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 22 |
| 38 | 213.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 43 | 213.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 54 | 213.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 55 | 213.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 61 | 213.54 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 75 | 213.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 99 | 213.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 109 | 213.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 154 | 214.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 155 | 214.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 238 | 214.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 255 | 214.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 284 | 215.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 311 | 215.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 314 | 215.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 359 | 215.62 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 380 | 215.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 440 | 216.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 481 | 216.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 591 | 216.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 799 | 217.33 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |