Os07g0529700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan endo-transglycosylase-like protein.
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Os07g0529700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglucan endo-transglycosylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 429.34 | 0.974 | 7.4 | -2.35 | 1.84 | -1.41 | 0.868 | 4.14 | -1.56 | 17.1 | 24.9 | 464 | 9.05 | -- |
| 470.5 | 1.01 | 7.4 | -1.69 | 1.86 | -1.37 | -2.04 | -- | -1.42 | 16.6 | 24.98 | 516 | 9.03 | -- |
| 430.72 | 0.967 | 7.39 | -2.32 | 1.89 | -1.38 | -- | 3.9 | -1.53 | 17.1 | 24.9 | 466 | 9.3 | -- |
| 478.55 | 1.02 | 7.35 | -1.69 | 1.78 | -1.42 | -- | -- | -1.37 | 16.8 | 25 | 515 | 9.05 | -- |
| 499.55 | 1.04 | 7.41 | -2.07 | -- | -2.78 | -- | 5.02 | -1.8 | -- | 25.32 | 478 | 7.12 | -- |
| 507.78 | 1.06 | 7.26 | -1.48 | 2.49 | -- | -2.41 | -- | -1.01 | 16.2 | -- | -- | -- | -- |
| 523.34 | 1.07 | 7.27 | -1.51 | 2.49 | -- | -- | -- | -1.02 | 16.3 | -- | -- | -- | -- |
| 520.31 | 1.06 | 7.22 | -1.6 | -- | -2.88 | -- | -- | -0.973 | -- | 33.5 | 794 | 8.34 | -- |
| 554.4 | 1.1 | 7.29 | -- | 1.96 | -1.11 | -- | -- | -1.12 | 16.7 | 25.06 | 511 | 9.01 | -- |
| 855.68 | 1.37 | 7.25 | -1.61 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 583.46 | 1.13 | 7.23 | -- | 2.51 | -- | -- | -- | -0.855 | 16.3 | -- | -- | -- | -- |
| 583.46 | 1.13 | 7.2 | -- | -- | -2.51 | -- | -- | -0.855 | -- | 35.99 | 812 | 8.44 | -- |
| 923.94 | 1.42 | 7.21 | -- | -- | -- | -- | -- | -0.91 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 427.44 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 17 |
| 23 | 439.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 24 | 440.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 27 | 440.47 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 12 |
| 40 | 441.78 | temperature | 25 | 270 | < th | dose independent | sin | 14 | NA |
| 43 | 442.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 77 | 446.05 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 83 | 446.49 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 100 | 447.55 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 103 | 447.84 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 15 |
| 123 | 449.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 128 | 449.54 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 7 |
| 136 | 449.86 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 158 | 450.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 214 | 453.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 237 | 453.92 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 3 |
| 247 | 454.14 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 12 |
| 281 | 455.10 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 7 |
| 293 | 455.33 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 303 | 455.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 314 | 455.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 357 | 456.48 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 14 | 7 |
| 371 | 456.67 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 16 |
| 372 | 456.67 | radiation | 10 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 386 | 456.84 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 420 | 457.61 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 19 |
| 455 | 458.17 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 478 | 458.61 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 14 |
| 531 | 459.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 533 | 459.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 545 | 459.74 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 620 | 460.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 623 | 460.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 627 | 460.63 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 679 | 461.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 713 | 461.52 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 717 | 461.58 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 21 |
| 727 | 461.71 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 12 |
| 779 | 462.27 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 794 | 462.44 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 798 | 462.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 799 | 462.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 804 | 462.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 990 | 464.26 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |