Os07g0529000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isocitrate lyase (Fragment).
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Os07g0529000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isocitrate lyase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.22 | 0.689 | 3.28 | 0.908 | 0.506 | 1.61 | 1.86 | 3.62 | 0.161 | 17.8 | 1010 | 9320 | -- | -- |
| 257.12 | 0.747 | 3.19 | 1.83 | 0.425 | 1.27 | 1.42 | -- | 0.212 | 18.1 | 1009 | 10480 | -- | -- |
| 222.68 | 0.695 | 3.27 | 0.93 | 0.522 | 1.59 | -- | 3.49 | 0.17 | 18.5 | 1011 | 9446 | -- | -- |
| 261.77 | 0.754 | 3.14 | 1.98 | 0.524 | 1.45 | -- | -- | 0.421 | 18.3 | 1009 | 10545 | -- | -- |
| 237.28 | 0.717 | 3.27 | 0.857 | -- | 1.6 | -- | 3.63 | 0.156 | -- | 1010 | 9479 | -- | -- |
| 333.94 | 0.857 | 3.23 | 1.43 | 0.547 | -- | 2.14 | -- | 0.0115 | 17.5 | -- | -- | -- | -- |
| 344.61 | 0.869 | 3.23 | 1.42 | 0.574 | -- | -- | -- | 0.0199 | 18.2 | -- | -- | -- | -- |
| 276.64 | 0.775 | 3.13 | 1.99 | -- | 1.47 | -- | -- | 0.4 | -- | 1009 | 10225 | -- | -- |
| 358.68 | 0.882 | 3.21 | -- | 0.534 | 1.06 | -- | -- | 0.138 | 18.1 | 1008 | 15147 | -- | -- |
| 361.67 | 0.889 | 3.22 | 1.4 | -- | -- | -- | -- | 0.00718 | -- | -- | -- | -- | -- |
| 397.77 | 0.933 | 3.27 | -- | 0.554 | -- | -- | -- | -0.138 | 18.3 | -- | -- | -- | -- |
| 368.86 | 0.894 | 3.21 | -- | -- | 1.09 | -- | -- | 0.0469 | -- | 1007 | 10965 | -- | -- |
| 413.68 | 0.949 | 3.26 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.37 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 22 | 220.57 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 116 | 222.35 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 143 | 222.63 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 15 | NA |
| 161 | 222.83 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 19 | NA |
| 382 | 224.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 383 | 224.41 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 416 | 224.56 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 420 | 224.57 | humidity | 50 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 427 | 224.62 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 451 | 224.74 | humidity | 50 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 476 | 224.78 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 524 | 224.90 | humidity | 60 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 525 | 224.90 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 537 | 224.97 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 549 | 225.01 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 555 | 225.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 578 | 225.10 | humidity | 50 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 586 | 225.11 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 15 |
| 589 | 225.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 2 | 13 |
| 607 | 225.20 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 641 | 225.36 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 650 | 225.40 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 667 | 225.45 | humidity | 50 | 4320 | < th | dose independent | sin | 5 | NA |
| 748 | 225.75 | humidity | 50 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 768 | 225.85 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 839 | 226.10 | humidity | 60 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 898 | 226.31 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 971 | 226.66 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 983 | 226.70 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 1 |