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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0526400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Type III polyketide synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.39 (0.0987) R2 : 0.509
β1 : -0.925 (0.363) R2dD : 0.00763 R2D : -0.0248
β2 : -- (--) R2dC : -- R2C : --
β3 : -6.66 (0.417) R2dE : 0.297 R2E : 0.334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.19 (0.216) R2dN8 : 0.156 R2N8 : 0.214
σ : 1.83
deviance : 1551.36
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.9422
memory length : 4302
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 13.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1540.67 1.84 6.4 -0.996 0.478 -6.32 1.46 0.806 2.12 3.92 0.9917 4312 18 13
1539.97 1.83 6.4 -0.862 0.499 -6.43 1.48 -- 2.14 3.9 0.9939 4308 18.1 13.1
1546.1 1.83 6.41 -0.973 0.501 -6.33 -- 0.829 2.15 3.67 0.9924 4310 18.1 12.9
1543.08 1.83 6.39 -0.94 0.438 -6.65 -- -- 2.16 3.75 0.9382 4309 18.1 13.1
1554.05 1.84 6.4 -0.96 -- -6.41 -- 0.855 2.19 -- 0.9994 4302 18.1 13
2388.91 2.29 6.21 -0.142 0.747 -- 1.76 -- 2.98 3.05 -- -- -- --
2398.88 2.29 6.21 -0.18 0.751 -- -- -- 2.98 2.66 -- -- -- --
1551.36 1.83 6.39 -0.925 -- -6.66 -- -- 2.19 -- 0.9422 4302 18.1 13.1
1563.63 1.84 6.36 -- 0.434 -6.39 -- -- 2.3 3.82 0.9564 4309 18.1 12.8
2431.79 2.3 6.21 -0.148 -- -- -- -- 2.99 -- -- -- -- --
2399.73 2.29 6.21 -- 0.747 -- -- -- 3 2.66 -- -- -- --
1570.89 1.85 6.37 -- -- -6.45 -- -- 2.3 -- 1.03 4302 18.1 12.8
2432.36 2.3 6.21 -- -- -- -- -- 3.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1488.10 radiation 1 43200 < th dose dependent rect. 19 10
2 1488.20 radiation 1 43200 < th dose dependent rect. 22 7
3 1488.40 radiation 1 43200 < th dose dependent rect. 24 5
8 1490.49 radiation 1 43200 < th dose dependent rect. 4 1
11 1494.54 radiation 1 43200 < th dose independent rect. 18 11
12 1495.53 radiation 1 43200 < th dose independent rect. 18 5
13 1495.61 radiation 1 43200 < th dose independent rect. 18 3
18 1496.10 radiation 1 43200 < th dose independent rect. 18 8
22 1524.81 radiation 1 43200 > th dose independent rect. 18 1
34 1543.06 temperature 15 43200 > th dose independent rect. 11 1
36 1546.23 radiation 1 4320 < th dose dependent rect. 18 13
37 1546.52 temperature 15 43200 < th dose independent rect. 10 2
47 1554.45 atmosphere 1015 43200 > th dose dependent rect. 1 1
48 1554.63 radiation 20 43200 < th dose independent rect. 8 1
49 1554.64 atmosphere 1010 43200 > th dose independent rect. 1 1
54 1555.10 atmosphere 1010 43200 < th dose independent rect. 1 1
67 1556.09 radiation 1 4320 < th dose dependent rect. 4 3
87 1557.48 radiation 1 4320 < th dose dependent rect. 5 1
94 1558.21 radiation 1 4320 < th dose dependent rect. 22 9
126 1561.27 radiation 1 43200 < th dose dependent rect. 18 5
127 1561.31 radiation 1 43200 < th dose dependent rect. 18 3
131 1561.39 radiation 1 43200 < th dose dependent rect. 18 8
164 1564.27 radiation 1 43200 < th dose dependent rect. 9 1
173 1565.26 atmosphere 1000 43200 > th dose dependent rect. 23 1
199 1566.96 atmosphere 1010 43200 < th dose independent rect. 5 1
201 1567.05 atmosphere 1010 43200 > th dose independent rect. 17 1
209 1567.53 radiation 1 43200 > th dose dependent rect. 18 1
238 1568.49 atmosphere 1010 43200 < th dose independent rect. 17 1
243 1568.63 radiation 1 4320 < th dose dependent sin 10 NA
244 1568.64 atmosphere 1010 43200 < th dose independent rect. 16 14
257 1568.87 atmosphere 1010 43200 > th dose independent rect. 16 12
258 1568.88 atmosphere 1010 43200 > th dose independent rect. 16 14
271 1569.05 temperature 15 43200 < th dose dependent rect. 24 1
277 1569.32 atmosphere 1010 43200 > th dose independent sin 11 NA
328 1570.20 atmosphere 1010 43200 < th dose independent sin 12 NA
378 1571.20 atmosphere 1010 43200 < th dose independent rect. 22 13
406 1571.61 atmosphere 1000 43200 > th dose dependent rect. 1 1
415 1571.78 atmosphere 1010 43200 < th dose independent rect. 10 20
421 1571.82 atmosphere 1000 43200 > th dose dependent rect. 19 8
433 1571.92 radiation 1 43200 < th dose independent rect. 8 2
439 1571.93 atmosphere 1010 43200 > th dose independent rect. 22 20
465 1572.16 atmosphere 1010 43200 < th dose independent rect. 10 1
476 1572.25 radiation 1 43200 > th dose independent rect. 8 2
501 1572.48 atmosphere 1010 43200 < th dose independent rect. 22 20
511 1572.56 atmosphere 1010 43200 > th dose independent rect. 9 21
570 1572.96 atmosphere 1010 43200 < th dose independent rect. 15 20
627 1573.33 atmosphere 1000 43200 > th dose dependent rect. 19 1
675 1573.63 atmosphere 1000 43200 > th dose dependent sin 11 NA
762 1574.14 atmosphere 1010 43200 > th dose independent no NA NA
772 1574.23 atmosphere 1010 43200 > th dose independent rect. 5 23
779 1574.30 atmosphere 1010 43200 > th dose independent rect. 9 1
840 1574.65 radiation 20 43200 < th dose independent rect. 23 12
843 1574.66 radiation 20 43200 < th dose independent rect. 21 14
844 1574.66 radiation 20 43200 < th dose independent rect. 18 17
849 1574.68 radiation 20 43200 < th dose independent rect. 2 9
856 1574.71 atmosphere 1010 43200 < th dose independent no NA NA
891 1574.89 atmosphere 1010 43200 < th dose independent rect. 5 23
925 1575.16 radiation 10 43200 < th dose independent rect. 12 2
990 1575.72 atmosphere 1010 43200 > th dose independent rect. 5 1