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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0525000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0246) R2 : 0.261
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.03 (0.168) R2dE : 0.249 R2E : 0.258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0534 (0.0529) R2dN8 : 0.00226 R2N8 : 0.0115
σ : 0.459
deviance : 97.25
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1003
memory length : 44
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.9
open length of G : 1.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.94 0.433 2.91 -0.238 0.00271 0.696 0.392 -17.2 0.0517 3.85 1006 11 2 0.983
97.18 0.459 2.93 0.00951 0.0141 2.04 -0.173 -- 0.0599 16.9 1003 46 1.9 1.15
85.36 0.43 2.91 -0.242 0.00511 0.69 -- -17 0.051 3.64 1006 12 2.02 1.05
97.22 0.459 2.94 0.0146 0.0237 2.04 -- -- 0.0507 14.5 1003 45 1.91 1.08
85.36 0.43 2.91 -0.244 -- 0.688 -- -17.1 0.0505 -- 1006 12 2.01 1.05
127.09 0.529 2.9 0.0121 0.14 -- -0.0708 -- 0.201 3.29 -- -- -- --
127.11 0.528 2.9 0.0134 0.14 -- -- -- 0.201 3.29 -- -- -- --
97.24 0.459 2.94 0.0144 -- 2.03 -- -- 0.0542 -- 1003 44 1.9 1.12
97.22 0.459 2.93 -- 0.0223 2.04 -- -- 0.0539 13.9 1003 44 1.9 1.13
128.21 0.529 2.9 0.0194 -- -- -- -- 0.205 -- -- -- -- --
127.11 0.527 2.9 -- 0.14 -- -- -- 0.199 3.29 -- -- -- --
97.25 0.459 2.93 -- -- 2.03 -- -- 0.0534 -- 1003 44 1.9 1.15
128.22 0.529 2.9 -- -- -- -- -- 0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.04 atmosphere 1005.0 10 > th dose dependent rect. 2 1
3 85.35 temperature 25.0 30 < th dose independent rect. 2 1
5 85.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
7 85.46 wind 3.0 30 < th dose independent rect. 2 1
10 85.51 temperature 30.0 30 < th dose dependent rect. 2 1
12 85.53 temperature 10.0 30 > th dose independent rect. 2 1
15 85.53 humidity 50.0 30 > th dose independent rect. 2 1
18 85.53 atmosphere 995.0 30 > th dose independent rect. 2 1
20 85.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 85.53 radiation 1.0 30 < th dose independent rect. 2 1
27 85.53 precipitation 0.1 30 < th dose independent rect. 2 1
28 85.53 temperature 10.0 30 > th dose independent rect. 3 23
29 85.53 radiation 1.0 30 < th dose dependent rect. 2 1
34 85.53 precipitation 0.1 30 < th dose dependent rect. 2 1
35 85.60 wind 9.0 30 < th dose dependent rect. 2 1
38 85.69 temperature 10.0 30 > th dose dependent rect. 2 1
40 85.78 humidity 50.0 30 > th dose dependent rect. 2 1
44 85.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
47 86.08 wind 1.0 30 > th dose independent rect. 2 1
54 86.50 humidity 90.0 30 > th dose independent rect. 2 1
64 86.81 radiation 10.0 43200 < th dose dependent rect. 3 1
92 86.94 wind 9.0 1440 < th dose independent rect. 3 1
93 86.94 temperature 10.0 1440 > th dose independent rect. 3 1
96 86.94 temperature 30.0 1440 < th dose independent rect. 3 1
100 86.94 humidity 50.0 1440 > th dose independent rect. 3 1
109 86.94 atmosphere 995.0 1440 > th dose independent rect. 3 1
110 86.94 radiation 1.0 1440 < th dose independent rect. 3 1
130 86.94 temperature 10.0 1440 > th dose independent rect. 4 23
133 86.94 radiation 1.0 1440 < th dose dependent rect. 3 1
153 87.87 atmosphere 995.0 30 > th dose independent rect. 3 23
172 90.25 precipitation 0.1 30 < th dose independent rect. 3 23
173 90.25 precipitation 0.1 30 < th dose dependent rect. 3 23
178 91.83 wind 9.0 30 < th dose independent rect. 3 23
197 99.98 humidity 50.0 30 > th dose independent rect. 3 23
223 105.00 temperature 30.0 30 < th dose independent rect. 3 23
239 106.67 atmosphere 1015.0 30 < th dose independent rect. 3 23
265 107.03 humidity 90.0 90 < th dose independent rect. 1 2
339 110.09 temperature 25.0 270 > th dose dependent rect. 23 7
359 110.44 wind 9.0 30 < th dose dependent rect. 3 23
399 112.11 wind 1.0 30 > th dose independent rect. 3 23
403 112.28 temperature 10.0 30 > th dose dependent rect. 3 23
431 113.00 wind 1.0 10 > th dose independent sin 15 NA
505 114.07 wind 1.0 30 > th dose dependent rect. 2 1
625 114.83 wind 5.0 10 > th dose independent rect. 10 1
629 114.83 wind 5.0 10 > th dose dependent rect. 10 1
638 114.87 humidity 90.0 90 > th dose independent rect. 8 2
644 114.92 wind 7.0 90 > th dose dependent rect. 8 1
670 115.05 wind 7.0 90 > th dose independent rect. 8 1
673 115.12 humidity 90.0 90 > th dose dependent rect. 8 2
676 115.15 precipitation 0.1 720 < th dose independent rect. 3 8
678 115.15 precipitation 0.1 720 < th dose dependent rect. 3 8
694 115.33 humidity 50.0 720 > th dose independent rect. 3 8
696 115.34 precipitation 0.1 720 < th dose independent rect. 23 16
697 115.34 precipitation 0.1 720 < th dose dependent rect. 23 16
699 115.40 precipitation 0.1 720 < th dose independent rect. 17 22
700 115.40 precipitation 0.1 720 < th dose dependent rect. 17 22
701 115.41 wind 1.0 10 < th dose independent rect. 2 7
714 115.45 temperature 10.0 720 > th dose independent rect. 15 8
715 115.45 temperature 10.0 720 > th dose independent rect. 23 16
737 115.59 wind 9.0 720 < th dose independent rect. 3 8
748 115.72 temperature 10.0 720 > th dose independent rect. 3 8
749 115.72 atmosphere 995.0 720 > th dose independent rect. 3 8
750 115.72 temperature 10.0 720 > th dose independent rect. 11 16
773 116.02 wind 5.0 720 < th dose independent rect. 3 2
780 116.09 precipitation 0.1 720 < th dose independent rect. 3 12
781 116.09 precipitation 0.1 720 < th dose dependent rect. 3 12
793 116.23 wind 9.0 90 < th dose independent rect. 3 12
796 116.26 wind 9.0 90 > th dose dependent rect. 21 13
800 116.29 atmosphere 995.0 720 > th dose independent rect. 23 16
808 116.34 atmosphere 995.0 720 > th dose independent rect. 15 8
814 116.38 humidity 50.0 90 > th dose independent rect. 3 12
818 116.41 precipitation 0.1 720 < th dose independent rect. 15 8
820 116.41 precipitation 0.1 720 < th dose dependent rect. 15 8
824 116.46 wind 9.0 90 < th dose independent rect. 15 12
825 116.48 wind 1.0 10 > th dose independent no NA NA
826 116.48 precipitation 0.1 90 < th dose independent rect. 3 12
827 116.48 precipitation 0.1 90 < th dose dependent rect. 3 12
834 116.55 wind 3.0 10 < th dose dependent rect. 22 5
836 116.57 temperature 10.0 90 > th dose independent rect. 3 12
837 116.57 temperature 10.0 90 > th dose independent rect. 15 12
838 116.57 atmosphere 1015.0 90 < th dose independent rect. 3 12
839 116.57 precipitation 0.1 90 < th dose independent rect. 15 12
841 116.57 precipitation 0.1 90 < th dose dependent rect. 15 12
843 116.60 precipitation 0.1 720 < th dose independent rect. 3 2
844 116.60 precipitation 0.1 720 < th dose dependent rect. 3 2
845 116.61 atmosphere 995.0 90 > th dose independent rect. 3 12
852 116.65 radiation 40.0 90 < th dose independent rect. 15 12
859 116.71 wind 1.0 10 > th dose independent rect. 18 15
860 116.77 humidity 50.0 90 > th dose independent rect. 15 12
867 116.84 atmosphere 995.0 90 > th dose independent rect. 15 12
872 116.86 wind 9.0 720 < th dose independent rect. 15 12
873 116.86 atmosphere 995.0 720 > th dose independent rect. 11 16
878 116.87 wind 1.0 30 < th dose dependent rect. 17 10
881 116.88 radiation 10.0 30 < th dose dependent rect. 3 23
883 116.91 atmosphere 1015.0 720 < th dose independent rect. 3 8
885 116.93 wind 9.0 720 < th dose independent rect. 15 2
887 116.94 wind 1.0 10 > th dose independent rect. 20 13
923 117.02 temperature 10.0 720 > th dose independent rect. 3 12
924 117.02 temperature 10.0 720 > th dose independent rect. 15 12
927 117.07 radiation 40.0 90 < th dose independent rect. 13 14
951 117.22 temperature 15.0 720 > th dose independent rect. 15 2
952 117.24 atmosphere 995.0 720 > th dose independent rect. 3 12
955 117.25 atmosphere 1015.0 720 < th dose independent rect. 15 2
956 117.25 temperature 10.0 720 > th dose independent rect. 17 22
962 117.27 humidity 50.0 720 > th dose independent rect. 3 12
968 117.32 precipitation 0.1 720 < th dose independent rect. 15 12
970 117.32 precipitation 0.1 720 < th dose dependent rect. 15 12
972 117.34 humidity 80.0 4320 < th dose dependent rect. 1 1
978 117.40 precipitation 0.1 720 < th dose independent rect. 15 2
979 117.40 precipitation 0.1 720 < th dose dependent rect. 15 2
989 117.44 temperature 30.0 90 < th dose independent rect. 15 12
995 117.45 atmosphere 1015.0 720 < th dose independent rect. 3 12