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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0524900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.23 (0.0352) R2 : 0.476
β1 : 1.41 (0.133) R2dD : 0.147 R2D : 0.194
β2 : 0.636 (0.0873) R2dC : 0.0618 R2C : 0.0844
β3 : -1.43 (0.144) R2dE : 0.141 R2E : 0.256
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.286 (0.0795) R2dN8 : 0.0232 R2N8 : 0.0313
σ : 0.646
deviance : 192.49
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_____
C
peak time of C : 3.45
E
wheather : radiation
threshold : 1.741
memory length : 4263
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.77 0.61 4.12 2.09 0.661 -2.14 2.09 -4.01 0.424 3.58 0.7559 4316 -- --
177.79 0.621 4.22 1.44 0.612 -1.45 2.15 -- 0.307 3.66 1.714 4253 -- --
179.78 0.624 4.09 2.28 0.696 -2.34 -- -5.09 0.535 3.52 0.2094 4300 -- --
192.49 0.646 4.23 1.41 0.636 -1.43 -- -- 0.286 3.45 1.741 4263 -- --
198.32 0.656 4.1 2.03 -- -2.66 -- -5.03 0.472 -- 0.17 4255 -- --
218.65 0.693 4.16 1.86 0.722 -- 2.21 -- 0.592 3.43 -- -- -- --
233.07 0.715 4.17 1.82 0.731 -- -- -- 0.58 2.78 -- -- -- --
213.63 0.681 4.24 1.5 -- -1.56 -- -- 0.283 -- 2.16 4235 -- --
235.41 0.715 4.28 -- 0.695 -1.91 -- -- 0.0757 3.21 0.9 4298 -- --
264.08 0.759 4.16 1.85 -- -- -- -- 0.598 -- -- -- -- --
320.57 0.838 4.21 -- 0.767 -- -- -- 0.377 2.8 -- -- -- --
258.14 0.748 4.28 -- -- -2.11 -- -- 0.0814 -- 0.95 4242 -- --
354.67 0.879 4.21 -- -- -- -- -- 0.393 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.28 humidity 70 43200 > th dose independent rect. 7 2
2 160.45 humidity 70 43200 < th dose independent rect. 7 2
3 160.72 humidity 70 43200 > th dose independent rect. 3 6
5 160.76 radiation 10 43200 < th dose independent rect. 15 1
12 161.31 humidity 70 43200 < th dose independent rect. 2 7
19 161.55 radiation 10 43200 < th dose independent rect. 15 12
29 161.56 radiation 1 43200 < th dose dependent rect. 18 11
31 161.58 humidity 70 43200 < th dose dependent rect. 8 1
47 161.90 humidity 80 43200 < th dose independent rect. 16 2
51 161.96 radiation 40 43200 < th dose dependent rect. 18 11
55 162.14 humidity 80 43200 > th dose independent rect. 17 1
56 162.14 radiation 1 43200 > th dose dependent rect. 17 1
57 162.18 radiation 20 43200 < th dose dependent rect. 16 1
58 162.18 radiation 1 43200 < th dose dependent rect. 23 6
62 162.24 radiation 1 43200 > th dose dependent rect. 16 14
79 162.46 radiation 1 43200 < th dose independent rect. 18 1
84 162.52 radiation 1 43200 < th dose independent rect. 18 10
106 162.64 radiation 1 43200 < th dose dependent rect. 18 1
109 162.65 radiation 1 43200 < th dose dependent rect. 18 8
129 162.71 radiation 10 43200 < th dose independent sin 16 NA
153 162.97 radiation 20 43200 < th dose dependent rect. 16 14
164 163.01 humidity 60 43200 < th dose dependent rect. 9 3
179 163.29 humidity 60 43200 < th dose dependent rect. 11 1
185 163.35 humidity 60 43200 < th dose dependent rect. 24 13
190 163.37 humidity 60 43200 < th dose dependent rect. 3 10
195 163.38 radiation 20 43200 < th dose dependent sin 14 NA
216 163.44 radiation 20 43200 < th dose dependent rect. 16 11
219 163.45 radiation 20 43200 < th dose dependent rect. 16 9
224 163.46 radiation 20 43200 < th dose dependent rect. 16 6
229 163.46 radiation 20 43200 < th dose dependent rect. 13 17
238 163.50 radiation 1 43200 > th dose dependent sin 14 NA
246 163.58 radiation 40 43200 < th dose dependent rect. 18 1
264 163.64 radiation 1 43200 > th dose dependent rect. 13 17
308 163.81 atmosphere 1010 14400 > th dose independent rect. 7 1
318 163.84 radiation 1 43200 > th dose dependent rect. 13 6
365 163.96 radiation 20 43200 < th dose dependent rect. 13 12
369 163.97 radiation 20 43200 < th dose dependent rect. 13 6
394 164.07 radiation 30 43200 < th dose independent rect. 15 1
398 164.08 radiation 40 43200 > th dose dependent rect. 13 19
401 164.09 radiation 40 43200 > th dose dependent rect. 13 3
435 164.15 humidity 90 43200 > th dose dependent rect. 5 1
455 164.18 atmosphere 1010 14400 > th dose independent rect. 7 4
456 164.18 radiation 30 43200 < th dose independent rect. 15 12
458 164.18 radiation 30 43200 < th dose independent rect. 15 14
466 164.19 radiation 30 43200 < th dose independent rect. 15 10
480 164.21 radiation 30 43200 < th dose independent rect. 15 5
481 164.21 radiation 30 43200 < th dose independent rect. 15 7
498 164.25 humidity 90 43200 > th dose independent rect. 23 1
526 164.27 radiation 1 43200 < th dose dependent rect. 18 17
529 164.28 atmosphere 1010 14400 < th dose independent rect. 8 1
559 164.30 atmosphere 1010 14400 < th dose independent rect. 6 6
580 164.34 atmosphere 1010 14400 < th dose independent rect. 8 3
598 164.40 radiation 1 14400 > th dose independent rect. 6 11
608 164.43 radiation 40 43200 < th dose independent rect. 12 15
609 164.43 radiation 40 43200 < th dose independent rect. 12 17
620 164.44 radiation 40 43200 < th dose independent rect. 12 10
634 164.45 radiation 40 43200 < th dose independent rect. 12 5
643 164.47 atmosphere 1010 14400 > th dose dependent rect. 8 1
718 164.58 radiation 1 14400 < th dose independent rect. 6 11
833 164.70 humidity 60 43200 < th dose dependent sin 8 NA
884 164.78 atmosphere 1010 14400 < th dose independent rect. 6 1
893 164.80 radiation 40 43200 > th dose dependent sin 14 NA
894 164.80 humidity 90 43200 > th dose dependent rect. 1 1
899 164.81 wind 9 43200 < th dose independent rect. 16 1
915 164.84 radiation 1 4320 < th dose dependent rect. 5 1
919 164.85 atmosphere 1010 43200 < th dose independent rect. 2 1