Os07g0522900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SGP1 monomeric G-protein.
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Os07g0522900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SGP1 monomeric G-protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.32 | 0.33 | 10.2 | 0.0906 | 0.838 | -1.61 | -0.619 | 0.986 | 0.0397 | 20 | 14.74 | 687 | -- | -- |
| 49.97 | 0.329 | 10.2 | -0.0784 | 0.836 | -1.61 | -0.423 | -- | 0.000811 | 20 | 12.1 | 685 | -- | -- |
| 50.3 | 0.33 | 10.2 | 0.0606 | 0.839 | -1.61 | -- | 0.659 | 0.029 | 19.9 | 14.72 | 677 | -- | -- |
| 50.42 | 0.331 | 10.2 | -0.0664 | 0.854 | -1.64 | -- | -- | -0.00451 | 19.9 | 12.11 | 666 | -- | -- |
| 63.96 | 0.372 | 10.2 | -0.0524 | -- | -1.3 | -- | 0.362 | -0.0149 | -- | 14.4 | 1392 | -- | -- |
| 82.07 | 0.425 | 10.2 | -0.485 | 0.454 | -- | -0.642 | -- | -0.254 | 19.8 | -- | -- | -- | -- |
| 83.24 | 0.427 | 10.2 | -0.469 | 0.453 | -- | -- | -- | -0.255 | 19.8 | -- | -- | -- | -- |
| 64.26 | 0.373 | 10.2 | -0.0536 | -- | -1.32 | -- | -- | -0.0166 | -- | 4.345 | 1403 | -- | -- |
| 50.52 | 0.331 | 10.2 | -- | 0.858 | -1.66 | -- | -- | 0.00635 | 20 | 11.93 | 676 | -- | -- |
| 94.38 | 0.454 | 10.2 | -0.474 | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
| 89.04 | 0.441 | 10.2 | -- | 0.457 | -- | -- | -- | -0.202 | 19.8 | -- | -- | -- | -- |
| 64.32 | 0.374 | 10.2 | -- | -- | -1.35 | -- | -- | -0.0073 | -- | 13.39 | 1407 | -- | -- |
| 100.32 | 0.468 | 10.2 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 6 | 46.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 11 | 46.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 12 | 46.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 117 | 48.07 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 136 | 48.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 192 | 48.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 200 | 49.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 218 | 49.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 222 | 49.21 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 225 | 49.23 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 248 | 49.37 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 254 | 49.39 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 272 | 49.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 279 | 49.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 283 | 49.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 312 | 49.63 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 372 | 49.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 401 | 49.97 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 419 | 50.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 635 | 50.43 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 826 | 50.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 838 | 50.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 885 | 50.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 16 |