Os07g0522600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.
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Os07g0522600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.66 | 0.354 | 6.24 | -0.328 | 1.41 | 0.387 | 0.234 | -0.168 | 0.206 | 19.6 | 20.6 | 96 | -- | -- |
| 56.72 | 0.351 | 6.24 | -0.295 | 1.41 | 0.394 | 0.234 | -- | 0.21 | 19.6 | 20.51 | 73 | -- | -- |
| 56.76 | 0.351 | 6.24 | -0.329 | 1.41 | 0.388 | -- | -0.146 | 0.208 | 19.5 | 20.52 | 75 | -- | -- |
| 56.86 | 0.351 | 6.24 | -0.303 | 1.41 | 0.397 | -- | -- | 0.213 | 19.5 | 20.54 | 73 | -- | -- |
| 114.56 | 0.499 | 6.31 | -0.522 | -- | 1.01 | -- | 0.133 | -0.155 | -- | 25.19 | 478 | -- | -- |
| 63.22 | 0.373 | 6.22 | -0.189 | 1.41 | -- | 0.195 | -- | 0.29 | 19.3 | -- | -- | -- | -- |
| 63.32 | 0.373 | 6.22 | -0.193 | 1.41 | -- | -- | -- | 0.291 | 19.3 | -- | -- | -- | -- |
| 113.84 | 0.497 | 6.28 | -0.495 | -- | 1 | -- | -- | -0.135 | -- | 25.1 | 499 | -- | -- |
| 58.97 | 0.358 | 6.23 | -- | 1.42 | 0.346 | -- | -- | 0.254 | 19.5 | 20.6 | 19 | -- | -- |
| 168.96 | 0.607 | 6.19 | -0.217 | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
| 64.3 | 0.375 | 6.22 | -- | 1.41 | -- | -- | -- | 0.312 | 19.3 | -- | -- | -- | -- |
| 120.05 | 0.51 | 6.26 | -- | -- | 0.926 | -- | -- | -0.0561 | -- | 25.17 | 475 | -- | -- |
| 170.21 | 0.609 | 6.18 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 2 | 53.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 11 | 54.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 12 | 54.00 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 13 | 54.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 15 | 54.04 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 16 | 54.04 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 15 |
| 17 | 54.05 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 19 | 54.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 32 | 54.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 39 | 54.35 | temperature | 10.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 52 | 54.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 53 | 54.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 59 | 54.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 82 | 54.66 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 85 | 54.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 113 | 54.86 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 114 | 54.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 124 | 54.92 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 13 |
| 129 | 54.95 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 156 | 55.02 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 157 | 55.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 190 | 55.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 210 | 55.22 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 16 |
| 212 | 55.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 224 | 55.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 9 |
| 237 | 55.26 | temperature | 20.0 | 270 | > th | dose independent | sin | 14 | NA |
| 240 | 55.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 309 | 55.42 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 310 | 55.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 311 | 55.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 312 | 55.43 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 316 | 55.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 319 | 55.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 320 | 55.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 13 |
| 328 | 55.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 335 | 55.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 342 | 55.47 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 361 | 55.50 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 381 | 55.52 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 384 | 55.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 387 | 55.53 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 390 | 55.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 391 | 55.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 7 |
| 415 | 55.57 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 420 | 55.57 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 421 | 55.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 422 | 55.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 425 | 55.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 427 | 55.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 433 | 55.59 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 434 | 55.59 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 486 | 55.65 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 544 | 55.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 566 | 55.75 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 574 | 55.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 591 | 55.78 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 609 | 55.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 668 | 55.85 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 702 | 55.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 23 |
| 720 | 55.90 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 738 | 55.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 758 | 55.93 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 780 | 55.94 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 841 | 56.01 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 888 | 56.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 892 | 56.04 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 918 | 56.06 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 21 |
| 979 | 56.10 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 985 | 56.10 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 8 |