Os07g0521800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0521800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.29 | 0.853 | 3.88 | 2.18 | 0.276 | 1.22 | 0.00214 | 1.35 | 0.551 | 11.7 | 24.3 | 170 | -- | -- |
| 331.37 | 0.848 | 3.85 | 2.38 | 0.278 | 1.07 | -0.238 | -- | 0.617 | 12.1 | 25.3 | 171 | -- | -- |
| 329.29 | 0.845 | 3.88 | 2.18 | 0.276 | 1.22 | -- | 1.35 | 0.551 | 11.7 | 24.3 | 169 | -- | -- |
| 331.59 | 0.848 | 3.85 | 2.37 | 0.278 | 1.06 | -- | -- | 0.617 | 12.2 | 25.3 | 171 | -- | -- |
| 333.39 | 0.85 | 3.9 | 2.16 | -- | 1.12 | -- | 1.31 | 0.535 | -- | 24.27 | 237 | -- | -- |
| 347.38 | 0.874 | 3.9 | 2.12 | 0.181 | -- | -0.391 | -- | 0.401 | 9.15 | -- | -- | -- | -- |
| 347.9 | 0.873 | 3.9 | 2.1 | 0.182 | -- | -- | -- | 0.401 | 9.44 | -- | -- | -- | -- |
| 335.35 | 0.853 | 3.87 | 2.35 | -- | 0.974 | -- | -- | 0.584 | -- | 24.69 | 261 | -- | -- |
| 464.42 | 1.01 | 3.95 | -- | 0.193 | 0.111 | -- | -- | 0.182 | 8.91 | 24.2 | 49 | -- | -- |
| 349.84 | 0.874 | 3.91 | 2.1 | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
| 464.62 | 1.01 | 3.96 | -- | 0.185 | -- | -- | -- | 0.166 | 8.57 | -- | -- | -- | -- |
| 466.17 | 1.01 | 3.96 | -- | -- | -0.153 | -- | -- | 0.15 | -- | 38.61 | 329 | -- | -- |
| 466.53 | 1.01 | 3.96 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 2 | 327.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 12 |
| 3 | 327.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 7 | 327.60 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 14 | 327.93 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 18 | 328.20 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 20 |
| 21 | 328.33 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 23 | 328.40 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 41 | 328.50 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 50 | 329.00 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 72 | 329.26 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 74 | 329.36 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 5 |
| 84 | 329.55 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 102 | 329.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 107 | 329.96 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 13 |
| 135 | 330.29 | temperature | 30.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 139 | 330.32 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 156 | 330.39 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 160 | 330.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 162 | 330.44 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 178 | 330.45 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 199 | 330.60 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 201 | 330.62 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 211 | 330.68 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 213 | 330.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 245 | 330.79 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 247 | 330.81 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 257 | 330.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 264 | 330.88 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 270 | 330.94 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 290 | 331.11 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 291 | 331.12 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 298 | 331.19 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 299 | 331.19 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 314 | 331.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 319 | 331.32 | temperature | 20.0 | 270 | < th | dose independent | sin | 13 | NA |
| 360 | 331.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 371 | 331.50 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 377 | 331.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 379 | 331.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 380 | 331.53 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 383 | 331.54 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 400 | 331.65 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 404 | 331.66 | temperature | 30.0 | 720 | > th | dose independent | sin | 11 | NA |
| 470 | 331.89 | temperature | 20.0 | 90 | > th | dose independent | rect. | 24 | 23 |
| 491 | 331.94 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 2 |
| 499 | 331.96 | temperature | 30.0 | 720 | < th | dose independent | sin | 11 | NA |
| 524 | 332.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 528 | 332.05 | temperature | 20.0 | 270 | > th | dose independent | sin | 14 | NA |
| 530 | 332.05 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 13 |
| 531 | 332.05 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 554 | 332.08 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 579 | 332.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 589 | 332.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 596 | 332.23 | temperature | 25.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 642 | 332.35 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 650 | 332.36 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 686 | 332.45 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 692 | 332.47 | temperature | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 738 | 332.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 779 | 332.67 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 825 | 332.81 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 842 | 332.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 872 | 332.88 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 13 |
| 919 | 333.00 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 21 |
| 926 | 333.02 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 960 | 333.12 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 1000 | 333.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 15 |