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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0521500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0223) R2 : 7.85e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00889 (0.047) R2dN8 : 0.000101 R2N8 : 7.85e-05
σ : 0.42
deviance : 81.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.82 0.404 3.08 0.528 0.072 0.493 -0.375 -1.41 0.207 17.2 24.91 5218 -- --
73.79 0.4 3.1 0.307 0.0692 0.517 -0.362 -- 0.226 16.3 22.3 10549 -- --
74.15 0.401 3.08 0.533 0.0694 0.49 -- -1.4 0.213 17.2 24.8 5218 -- --
74.17 0.401 3.1 0.307 0.0699 0.52 -- -- 0.224 15.9 22.3 10550 -- --
74.4 0.402 3.08 0.529 -- 0.491 -- -1.39 0.212 -- 24.83 5247 -- --
80.26 0.42 3.15 -0.0531 0.0856 -- -0.354 -- 0.00637 16.1 -- -- -- --
80.6 0.42 3.15 -0.0568 0.0837 -- -- -- 0.00441 15.4 -- -- -- --
74.45 0.402 3.1 0.309 -- 0.526 -- -- 0.226 -- 22.25 10626 -- --
75.26 0.404 3.12 -- 0.06 0.367 -- -- 0.15 15.7 23.51 9344 -- --
80.99 0.421 3.15 -0.0604 -- -- -- -- 0.0022 -- -- -- -- --
80.68 0.42 3.15 -- 0.0848 -- -- -- 0.0107 15.4 -- -- -- --
75.48 0.405 3.12 -- -- 0.374 -- -- 0.15 -- 23.5 9360 -- --
81.09 0.42 3.15 -- -- -- -- -- 0.00889 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.72 wind 1 1440 > th dose independent rect. 11 1
2 69.74 wind 3 1440 < th dose dependent rect. 10 2
3 69.75 wind 1 1440 < th dose independent rect. 11 1
18 71.95 humidity 90 14400 > th dose dependent rect. 5 3
19 72.06 humidity 90 14400 > th dose dependent rect. 3 22
22 72.09 humidity 90 14400 > th dose dependent sin 16 NA
29 72.11 humidity 90 14400 > th dose dependent rect. 4 7
33 72.12 humidity 90 14400 > th dose dependent rect. 9 23
36 72.14 temperature 20 4320 > th dose independent rect. 6 1
37 72.14 humidity 90 14400 > th dose dependent rect. 16 10
39 72.15 wind 3 1440 < th dose independent rect. 9 5
41 72.15 humidity 90 14400 > th dose dependent rect. 19 6
52 72.17 humidity 90 14400 > th dose dependent rect. 4 10
53 72.17 humidity 90 14400 > th dose dependent rect. 13 14
56 72.17 humidity 90 14400 > th dose dependent rect. 13 22
58 72.18 humidity 90 14400 > th dose dependent no NA NA
68 72.18 humidity 90 14400 > th dose dependent rect. 16 22
74 72.18 humidity 90 14400 > th dose dependent rect. 18 23
75 72.19 temperature 20 4320 < th dose independent rect. 3 4
122 72.23 humidity 90 14400 > th dose dependent rect. 6 1
129 72.24 temperature 20 4320 > th dose independent rect. 3 4
131 72.24 humidity 90 14400 > th dose dependent rect. 21 3
197 72.32 humidity 90 14400 < th dose independent rect. 22 1
206 72.34 humidity 90 14400 < th dose independent rect. 17 8
226 72.36 temperature 20 4320 > th dose independent rect. 3 1
231 72.37 humidity 90 14400 < th dose independent sin 16 NA
250 72.39 radiation 1 720 > th dose independent rect. 17 13
253 72.40 humidity 90 14400 > th dose independent sin 16 NA
255 72.40 humidity 90 14400 < th dose independent rect. 18 1
268 72.41 temperature 20 4320 < th dose independent rect. 3 1
290 72.43 humidity 90 14400 < th dose independent rect. 10 17
293 72.44 humidity 90 14400 > th dose independent rect. 18 2
294 72.44 wind 3 1440 > th dose independent rect. 9 5
298 72.44 humidity 90 14400 > th dose independent rect. 13 14
307 72.45 humidity 90 14400 > th dose independent rect. 15 12
352 72.49 humidity 90 14400 > th dose independent rect. 9 20
358 72.50 humidity 90 14400 > th dose independent rect. 17 7
366 72.50 humidity 90 14400 > th dose dependent sin 2 NA
399 72.53 humidity 90 14400 < th dose independent rect. 7 20
407 72.54 humidity 90 1440 < th dose independent rect. 10 2
420 72.54 humidity 90 14400 > th dose independent rect. 9 23
421 72.54 humidity 80 14400 > th dose dependent rect. 18 1
451 72.56 humidity 90 14400 < th dose independent rect. 5 22
460 72.57 humidity 90 14400 < th dose independent rect. 20 4
466 72.57 humidity 90 14400 < th dose independent rect. 9 21
473 72.58 radiation 1 14400 > th dose independent rect. 18 11
508 72.60 humidity 90 14400 < th dose independent rect. 12 20
511 72.60 humidity 90 14400 > th dose independent rect. 13 22
513 72.60 humidity 90 14400 > th dose independent rect. 4 23
515 72.60 humidity 90 14400 < th dose independent rect. 7 23
531 72.61 humidity 90 14400 > th dose independent rect. 16 19
536 72.61 humidity 90 14400 > th dose independent rect. 17 21
537 72.61 humidity 90 14400 > th dose independent rect. 1 22
544 72.62 humidity 90 14400 > th dose independent rect. 18 4
550 72.62 humidity 90 14400 < th dose independent rect. 15 17
568 72.62 humidity 90 14400 < th dose independent rect. 24 23
583 72.63 humidity 90 14400 < th dose independent rect. 17 21
593 72.64 humidity 90 14400 > th dose independent no NA NA
594 72.64 humidity 90 14400 > th dose independent rect. 21 3
602 72.64 humidity 90 14400 < th dose independent rect. 16 19
613 72.64 humidity 90 14400 < th dose independent rect. 13 22
667 72.66 humidity 90 14400 > th dose independent rect. 21 23
674 72.67 humidity 90 14400 < th dose independent no NA NA
752 72.71 humidity 90 14400 < th dose independent rect. 20 23
754 72.72 humidity 90 14400 > th dose independent rect. 22 1
789 72.74 radiation 40 4320 < th dose dependent rect. 8 1
797 72.75 radiation 1 4320 > th dose dependent rect. 7 2
858 72.81 humidity 80 43200 > th dose independent rect. 2 1
899 72.83 radiation 1 1440 < th dose dependent rect. 18 16
936 72.86 radiation 1 1440 < th dose dependent sin 9 NA
998 72.92 radiation 1 14400 > th dose independent rect. 17 2