Os07g0521400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0521400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.19 | 0.591 | 4.59 | 0.924 | 1.75 | 0.408 | 1.83 | 2.05 | 0.513 | 19.4 | 67.64 | 6089 | -- | -- |
| 164.47 | 0.597 | 4.61 | 1.17 | 1.77 | 0.483 | 1.7 | -- | 0.584 | 19.5 | 70.06 | 6742 | -- | -- |
| 166.66 | 0.601 | 4.59 | 0.89 | 1.73 | 0.414 | -- | 2.04 | 0.523 | 19.4 | 67 | 5882 | -- | -- |
| 172.4 | 0.612 | 4.61 | 1.13 | 1.78 | 0.498 | -- | -- | 0.597 | 19.5 | 70 | 6685 | -- | -- |
| 325.39 | 0.84 | 4.55 | 0.86 | -- | 0.437 | -- | 1.97 | 0.507 | -- | 67.51 | 5737 | -- | -- |
| 168.39 | 0.608 | 4.64 | 1.24 | 1.72 | -- | 1.71 | -- | 0.427 | 19.4 | -- | -- | -- | -- |
| 176.39 | 0.622 | 4.64 | 1.2 | 1.73 | -- | -- | -- | 0.43 | 19.4 | -- | -- | -- | -- |
| 330.97 | 0.847 | 4.57 | 1.19 | -- | 0.379 | -- | -- | 0.549 | -- | 61.47 | 17271 | -- | -- |
| 205.08 | 0.667 | 4.6 | -- | 1.77 | 0.789 | -- | -- | 0.595 | 19.5 | 73.98 | 6723 | -- | -- |
| 335.44 | 0.856 | 4.6 | 1.18 | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
| 214.65 | 0.685 | 4.67 | -- | 1.72 | -- | -- | -- | 0.296 | 19.4 | -- | -- | -- | -- |
| 348.53 | 0.87 | 4.6 | -- | -- | 1.36 | -- | -- | 0.379 | -- | -9.595 | 47520 | -- | -- |
| 371.96 | 0.9 | 4.63 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.53 | wind | 1.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 2 | 154.55 | wind | 1.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 3 | 155.07 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 5 | 155.12 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 6 | 155.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 47 | 156.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 50 | 156.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 61 | 156.34 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 75 | 156.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 95 | 156.60 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 135 | 157.06 | wind | 1.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 143 | 157.11 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 189 | 157.30 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 199 | 157.37 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 211 | 157.42 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 258 | 157.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 278 | 157.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 281 | 157.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 295 | 157.74 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 297 | 157.74 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 316 | 157.77 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 5 |
| 323 | 157.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 332 | 157.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 344 | 157.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 347 | 157.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 356 | 157.91 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 358 | 157.92 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 363 | 157.93 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 367 | 157.95 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 374 | 157.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 400 | 158.07 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 402 | 158.08 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 408 | 158.11 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 410 | 158.11 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 421 | 158.15 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 444 | 158.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 450 | 158.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 452 | 158.24 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 454 | 158.24 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 459 | 158.25 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 460 | 158.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 462 | 158.25 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 469 | 158.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 472 | 158.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 476 | 158.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 502 | 158.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 504 | 158.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 509 | 158.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 10 |
| 529 | 158.41 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 578 | 158.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 584 | 158.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 592 | 158.51 | wind | 1.0 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 602 | 158.54 | wind | 3.0 | 720 | > th | dose independent | rect. | 24 | 6 |
| 670 | 158.63 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 696 | 158.67 | wind | 1.0 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 703 | 158.69 | wind | 1.0 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 764 | 158.79 | humidity | 80.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 765 | 158.79 | radiation | 1.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 798 | 158.83 | radiation | 1.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 835 | 158.86 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 844 | 158.87 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 847 | 158.87 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 860 | 158.89 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 867 | 158.89 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 883 | 158.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 888 | 158.92 | humidity | 90.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 908 | 158.94 | humidity | 90.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 981 | 159.00 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 8 |