Os07g0520800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os07g0520800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.95 | 0.497 | 10.1 | -0.602 | 1.19 | 0.957 | 0.864 | 4.12 | -0.885 | 21.1 | 31.23 | 223 | -- | -- |
| 128.36 | 0.528 | 10.1 | -0.65 | 1.13 | 0.789 | 0.131 | -- | -0.887 | 21.2 | 28.92 | 323 | -- | -- |
| 113.94 | 0.497 | 10.1 | -0.61 | 1.15 | 0.986 | -- | 3.89 | -0.88 | 21.1 | 33.16 | 256 | -- | -- |
| 128.41 | 0.528 | 10.1 | -0.653 | 1.12 | 0.807 | -- | -- | -0.884 | 21.1 | 30 | 323 | -- | -- |
| 159.62 | 0.588 | 10 | -0.764 | -- | 1.19 | -- | 2.63 | -1.03 | -- | 25.96 | 859 | -- | -- |
| 136.35 | 0.547 | 10 | -0.631 | 1.17 | -- | 0.418 | -- | -0.832 | 20.2 | -- | -- | -- | -- |
| 136.88 | 0.548 | 10 | -0.643 | 1.17 | -- | -- | -- | -0.832 | 20.2 | -- | -- | -- | -- |
| 149.79 | 0.57 | 10 | -0.76 | -- | 1.32 | -- | -- | -1 | -- | -4.035e-05 | 906 | -- | -- |
| 139.7 | 0.55 | 10 | -- | 1.14 | 0.783 | -- | -- | -0.825 | 21.1 | 29.3 | 318 | -- | -- |
| 211.93 | 0.68 | 10 | -0.652 | -- | -- | -- | -- | -0.845 | -- | -- | -- | -- | -- |
| 147.78 | 0.569 | 10 | -- | 1.17 | -- | -- | -- | -0.76 | 20.2 | -- | -- | -- | -- |
| 164.82 | 0.598 | 10 | -- | -- | 1.27 | -- | -- | -0.909 | -- | -49 | 898 | -- | -- |
| 223.15 | 0.697 | 9.99 | -- | -- | -- | -- | -- | -0.773 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 2 | 108.05 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 6 | 108.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 13 | 108.96 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 20 | 109.75 | radiation | 30 | 270 | > th | dose dependent | sin | 7 | NA |
| 34 | 110.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 52 | 111.08 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 92 | 111.65 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 98 | 111.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 103 | 111.86 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 176 | 112.44 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 180 | 112.51 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 224 | 112.70 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 226 | 112.75 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 398 | 113.13 | radiation | 40 | 270 | > th | dose independent | sin | 8 | NA |
| 413 | 113.32 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 22 |
| 417 | 113.33 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |
| 483 | 113.52 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 11 |
| 737 | 114.17 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 23 |
| 767 | 114.34 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 833 | 114.59 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 11 |
| 973 | 114.83 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 3 |