Os07g0520600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0520600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.92 | 0.43 | 11.6 | -2.22 | 1.09 | 1.52 | 0.47 | -3.51 | -0.37 | 6.45 | 24.48 | 1297 | -- | -- |
| 89.31 | 0.44 | 11.5 | -1.32 | 1.1 | 1.2 | 0.599 | -- | -0.22 | 6.22 | 23.19 | 1306 | -- | -- |
| 84.45 | 0.428 | 11.6 | -2.21 | 1.09 | 1.53 | -- | -3.53 | -0.367 | 6.48 | 24.58 | 1295 | -- | -- |
| 89.42 | 0.44 | 11.5 | -1.29 | 1.09 | 1.22 | -- | -- | -0.213 | 6.5 | 23.2 | 1265 | -- | -- |
| 145.64 | 0.562 | 11.6 | -2.21 | -- | 1.59 | -- | -3.34 | -0.385 | -- | 24.1 | 1310 | -- | -- |
| 137.69 | 0.55 | 11.4 | -0.892 | 1.17 | -- | 0.62 | -- | 0.0433 | 5.86 | -- | -- | -- | -- |
| 138.63 | 0.551 | 11.4 | -0.888 | 1.17 | -- | -- | -- | 0.0409 | 5.88 | -- | -- | -- | -- |
| 150.59 | 0.572 | 11.5 | -1.3 | -- | 1.28 | -- | -- | -0.231 | -- | 23.05 | 1309 | -- | -- |
| 128.41 | 0.528 | 11.4 | -- | 1.07 | 0.839 | -- | -- | 0.0689 | 6.46 | 25.3 | 1254 | -- | -- |
| 209.46 | 0.676 | 11.4 | -0.852 | -- | -- | -- | -- | 0.0681 | -- | -- | -- | -- | -- |
| 159.4 | 0.591 | 11.4 | -- | 1.16 | -- | -- | -- | 0.14 | 5.92 | -- | -- | -- | -- |
| 189.94 | 0.642 | 11.4 | -- | -- | 0.982 | -- | -- | 0.0584 | -- | 24.5 | 1301 | -- | -- |
| 228.63 | 0.706 | 11.4 | -- | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 3 | 82.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 10 | 82.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 17 | 82.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 65 | 83.42 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 172 | 85.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 189 | 85.75 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 203 | 85.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 393 | 89.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 406 | 89.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 494 | 90.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 499 | 90.66 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 500 | 90.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 510 | 90.79 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 512 | 90.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 517 | 90.83 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 527 | 90.90 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 533 | 90.93 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 534 | 90.93 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 535 | 90.93 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 540 | 90.96 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 550 | 90.99 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 557 | 91.02 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 559 | 91.02 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 562 | 91.03 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 568 | 91.06 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 584 | 91.08 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 636 | 91.17 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 657 | 91.23 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 670 | 91.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 692 | 91.29 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 698 | 91.30 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 699 | 91.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 735 | 91.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 738 | 91.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 740 | 91.38 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 746 | 91.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 755 | 91.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 764 | 91.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 781 | 91.43 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 813 | 91.47 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 814 | 91.47 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 844 | 91.52 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 862 | 91.53 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 896 | 91.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 950 | 91.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 958 | 91.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 994 | 91.73 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |