Os07g0519300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os07g0519300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.71 | 0.773 | 4.4 | -3 | 0.764 | -1.24 | -1.81 | 0.407 | -0.494 | 7.25 | 24.6 | 703 | -- | -- |
| 270.87 | 0.767 | 4.39 | -2.93 | 0.765 | -1.29 | -1.73 | -- | -0.482 | 7.21 | 24.49 | 688 | -- | -- |
| 278.56 | 0.777 | 4.38 | -2.9 | 0.767 | -1.33 | -- | -0.435 | -0.458 | 7.25 | 24.43 | 688 | -- | -- |
| 278.79 | 0.778 | 4.39 | -2.96 | 0.758 | -1.26 | -- | -- | -0.471 | 7.23 | 24.5 | 694 | -- | -- |
| 302.63 | 0.81 | 4.43 | -3.13 | -- | -1.15 | -- | 0.814 | -0.523 | -- | 27.9 | 1353 | -- | -- |
| 295.01 | 0.805 | 4.34 | -2.59 | 0.651 | -- | -1.71 | -- | -0.224 | 6.75 | -- | -- | -- | -- |
| 302.38 | 0.814 | 4.34 | -2.61 | 0.647 | -- | -- | -- | -0.22 | 6.6 | -- | -- | -- | -- |
| 303.29 | 0.811 | 4.41 | -2.97 | -- | -1.24 | -- | -- | -0.469 | -- | 25.6 | 1369 | -- | -- |
| 480.01 | 1.02 | 4.27 | -- | 0.61 | -1.14 | -- | -- | 0.0646 | 6.74 | 14.4 | 44 | -- | -- |
| 324.18 | 0.841 | 4.35 | -2.6 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 482.56 | 1.03 | 4.27 | -- | 0.615 | -- | -- | -- | 0.0712 | 6.85 | -- | -- | -- | -- |
| 499.47 | 1.04 | 4.29 | -- | -- | -1.21 | -- | -- | 0.0747 | -- | 14.66 | 60 | -- | -- |
| 502.38 | 1.05 | 4.29 | -- | -- | -- | -- | -- | 0.0815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.26 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 2 | 267.54 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 3 | 267.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 8 | 268.57 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 10 | 268.73 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 7 |
| 12 | 269.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 13 | 269.15 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 8 |
| 14 | 269.46 | temperature | 15 | 270 | > th | dose independent | rect. | 11 | 22 |
| 16 | 269.78 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 12 | 10 |
| 20 | 269.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 23 | 269.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 26 | 270.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 27 | 270.15 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 9 |
| 43 | 270.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 65 | 270.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 70 | 270.69 | humidity | 60 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 72 | 270.70 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 23 |
| 84 | 270.79 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 89 | 270.87 | temperature | 15 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 91 | 270.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 95 | 270.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 101 | 270.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 108 | 271.00 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 120 | 271.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 137 | 271.21 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 139 | 271.23 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 164 | 271.37 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 13 | 22 |
| 173 | 271.42 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 174 | 271.43 | temperature | 15 | 270 | > th | dose independent | rect. | 13 | 18 |
| 176 | 271.44 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 184 | 271.47 | temperature | 15 | 270 | > th | dose independent | rect. | 12 | 10 |
| 285 | 272.02 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 289 | 272.03 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 16 |
| 296 | 272.05 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 18 |
| 319 | 272.21 | humidity | 60 | 90 | > th | dose independent | rect. | 3 | 8 |
| 342 | 272.36 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 21 |
| 352 | 272.40 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 16 |
| 355 | 272.41 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 367 | 272.46 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 416 | 272.64 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 23 |
| 442 | 272.74 | temperature | 15 | 270 | > th | dose independent | rect. | 23 | 23 |
| 467 | 272.86 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 19 |
| 478 | 272.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 480 | 272.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 492 | 272.96 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 564 | 273.19 | temperature | 20 | 720 | < th | dose dependent | sin | 20 | NA |
| 567 | 273.20 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 583 | 273.26 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 17 |
| 590 | 273.27 | temperature | 15 | 30 | > th | dose dependent | rect. | 14 | 19 |
| 617 | 273.34 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 651 | 273.43 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 662 | 273.47 | temperature | 15 | 90 | > th | dose independent | rect. | 11 | 16 |
| 677 | 273.51 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 733 | 273.65 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 739 | 273.66 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 755 | 273.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 798 | 273.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 21 |
| 804 | 273.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 809 | 273.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 817 | 273.84 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 19 |
| 858 | 273.91 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 16 |
| 877 | 273.96 | humidity | 60 | 10 | > th | dose independent | rect. | 3 | 8 |
| 886 | 273.97 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 950 | 274.08 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 3 | 7 |
| 1000 | 274.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |