Os07g0518300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0518300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.15 | 0.678 | 2.96 | -0.393 | 0.181 | 3.1 | -0.4 | -6.6 | 0.186 | 9.63 | 0.6245 | 558 | -- | -- |
| 208.87 | 0.673 | 2.91 | -0.237 | 0.148 | 1.45 | -0.406 | -- | 0.212 | 8.87 | 0.6269 | 607 | -- | -- |
| 208.73 | 0.673 | 2.96 | -0.406 | 0.184 | 3.11 | -- | -6.35 | 0.184 | 9.34 | 0.601 | 557 | -- | -- |
| 208.88 | 0.673 | 2.92 | -0.269 | 0.186 | 1.34 | -- | -- | 0.187 | 9.45 | 0.8408 | 557 | -- | -- |
| 210.66 | 0.676 | 2.96 | -0.386 | -- | 2.94 | -- | -5.94 | 0.186 | -- | 0.4872 | 557 | -- | -- |
| 220.32 | 0.696 | 2.93 | -0.108 | 0.102 | -- | -0.69 | -- | 0.16 | 9.94 | -- | -- | -- | -- |
| 222.09 | 0.698 | 2.93 | -0.137 | 0.115 | -- | -- | -- | 0.158 | 8.62 | -- | -- | -- | -- |
| 210.87 | 0.676 | 2.92 | -0.259 | -- | 1.28 | -- | -- | 0.184 | -- | 0.8106 | 557 | -- | -- |
| 210.68 | 0.676 | 2.92 | -- | 0.179 | 1.26 | -- | -- | 0.214 | 9.47 | 0.8589 | 557 | -- | -- |
| 222.84 | 0.698 | 2.93 | -0.136 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 222.58 | 0.698 | 2.92 | -- | 0.115 | -- | -- | -- | 0.173 | 8.7 | -- | -- | -- | -- |
| 212.58 | 0.679 | 2.92 | -- | -- | 1.18 | -- | -- | 0.21 | -- | 0.8342 | 557 | -- | -- |
| 223.33 | 0.698 | 2.93 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.55 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 13 | 197.55 | wind | 9.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 64 | 206.68 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 65 | 207.20 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 67 | 207.21 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 2 |
| 81 | 208.03 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 10 |
| 86 | 208.18 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 141 | 209.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 143 | 209.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 155 | 209.26 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 164 | 209.30 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 166 | 209.33 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 1 |
| 168 | 209.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 174 | 209.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 6 |
| 176 | 209.46 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 202 | 209.46 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 230 | 209.49 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 17 | NA |
| 232 | 209.50 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 257 | 209.80 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 259 | 209.81 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 280 | 209.91 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 307 | 209.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 356 | 210.08 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 367 | 210.10 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 12 |
| 427 | 210.28 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 19 | NA |
| 552 | 210.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 553 | 210.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 601 | 210.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 603 | 210.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 8 |
| 612 | 210.86 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 629 | 210.90 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 635 | 210.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 11 |
| 636 | 210.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 11 |
| 649 | 210.94 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 660 | 210.96 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 698 | 211.04 | precipitation | 0.1 | 720 | > th | dose independent | sin | 16 | NA |
| 700 | 211.04 | precipitation | 0.1 | 720 | < th | dose independent | sin | 16 | NA |
| 703 | 211.04 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 16 | NA |
| 767 | 211.20 | wind | 3.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 890 | 211.39 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 942 | 211.45 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 19 | NA |
| 944 | 211.45 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 19 | NA |
| 948 | 211.46 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 19 | NA |
| 950 | 211.46 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 955 | 211.46 | precipitation | 0.1 | 720 | > th | dose dependent | no | NA | NA |